Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2349
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   7.2  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   9.5  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 395 FFVNYRXXXXXXXXXXXLWFSLTALVQSSFRGAE*LSLDYQLNIRKIFADQLQQRRSALV 216
           ++++ R            WF L     S    A+ + +DY    +KIFA +  ++  ALV
Sbjct: 342 YYIHKRPHLDYFLSNVSQWFRLILFTASVQPYADPI-IDYLERDKKIFAKRYYRQHCALV 400

Query: 215 KEAFI 201
             +F+
Sbjct: 401 DSSFV 405


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 527 LFGTYTVCSQVFFGNVVSKIQVLARFIL-*YSQYRYNV*NNIYFTFFVN 384
           LFG + +C  +F  N+++   +  RF+    S +++NV + +   + +N
Sbjct: 232 LFGIFVLCVSLFLVNIIADRILYGRFVFPIISFFQFNVTSGLSSLYGLN 280


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -2

Query: 588 VNCNTTHYRANWVPGPPLEIIIRNLHCMFASFFWKC 481
           V C + H   NW+     + ++R    M     WKC
Sbjct: 382 VRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVWKC 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,912
Number of Sequences: 5004
Number of extensions: 42706
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)