Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2349
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-2|CAA85274.1|  378|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U23526-5|AAB36850.1|  391|Caenorhabditis elegans Acyltransferase...    29   2.2  
U41107-7|AAY55831.1|   38|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z36238-2|CAA85274.1|  378|Caenorhabditis elegans Hypothetical
           protein R74.4 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 301 PRNELCTKAVSENHKHYFRLNFLSNHR 381
           P  E  T +VS+ H H++ +N    HR
Sbjct: 145 PPGETVTSSVSKQHAHFYEINIQEEHR 171


>U23526-5|AAB36850.1|  391|Caenorhabditis elegans
           Acyltransferase-like protein 12 protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 567 YRANWVPGPPLEIIIRNLHCMFASFFWKC 481
           Y+    PG   ++I  N   MFA  FW C
Sbjct: 338 YKTGHFPGDKTKVIPNNYEMMFAQVFWGC 366


>U41107-7|AAY55831.1|   38|Caenorhabditis elegans Hypothetical
           protein F55C12.2 protein.
          Length = 38

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 603 VKRRPVNCNTTHYRANWVPGPPLEIIIRNLHC 508
           +K+   NC    Y+ +W PG PL  +   + C
Sbjct: 1   MKQALANCGKPEYQYDWEPGIPLNYMTMEVAC 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,728,814
Number of Sequences: 27780
Number of extensions: 240935
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)