Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2348
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1FHP6 Cluster: Helix-turn-helix, AraC type:Response re...    34   3.8  
UniRef50_Q8IIT8 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  

>UniRef50_Q1FHP6 Cluster: Helix-turn-helix, AraC type:Response
           regulator receiver; n=1; Clostridium phytofermentans
           ISDg|Rep: Helix-turn-helix, AraC type:Response regulator
           receiver - Clostridium phytofermentans ISDg
          Length = 253

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 676 VPSEGMYFGNGYFLKYLTAIVVFRSRGASYGCVA-FGIQNCECGFLSVSNK*RIKH 512
           + S  + +   Y+ K LT I V    G + G ++    QN  CGF+   NK RIKH
Sbjct: 142 IVSSAIEYMEEYYHKNLTLIEVSNKVGITAGYLSTLFTQNMNCGFVEYLNKIRIKH 197


>UniRef50_Q8IIT8 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1988

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +1

Query: 451 LRNDLLIEPKHSTRSVFIAAYV*FFIYWIPTRNHIRSFEYQTRHNRSLHRDFEKQQWQSN 630
           L + +LI+   +   V I  Y+ +F+Y I    +I+S +Y ++ N    +D  K    +N
Sbjct: 761 LNSSILIKFVQACNDVLIK-YIDYFVYIIYGYKNIKSKDYSSKCNTYNEKDTSKNSMHNN 819

Query: 631 ILKNNRYRNTCPHSVPK 681
              NN   N C   + K
Sbjct: 820 --NNNNNNNNCEVIIQK 834


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,533,957
Number of Sequences: 1657284
Number of extensions: 10281901
Number of successful extensions: 26565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26561
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)