Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2348
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    29   0.48 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.4  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   4.5  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   5.9  

>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 35  FKTYLSNVTIQYKKKSVNRFLNTNRKKNHKD 127
           F +  S  ++++K K+V   LN +RKKN+KD
Sbjct: 241 FSSSSSQTSLKHKPKNVFAELNKSRKKNNKD 271


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 181  NRSSFKNINLKVKTSSRDIFMIFFSICI*KSIYRFF 74
            N ++FK++ L ++T   D+F++ +   +  S  RFF
Sbjct: 1272 NWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFF 1307


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 181  NRSSFKNINLKVKTSSRDIFMIFFSICI*KSIYRFF 74
            N ++FK++ L ++T   D+F++ +   +  S  RFF
Sbjct: 1272 NWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFF 1307


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 644 LFFKIFDCHCCFSKSRCKLRLCRVWYSKLRMWFLVGIQ*MKN*TYAAMN 498
           LF +    H  F K+R    L R WYSKL    L  I+ +++ T A+M+
Sbjct: 2   LFQRRLHFHQFFGKTRVTGSLSRQWYSKLPS-KLADIKKLRSETNASMD 49


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 370 SLSAVMQRSVYRTLFLSAIVKHAHMIHV 287
           SL+ V+Q+ +Y TL++  +VKH    HV
Sbjct: 101 SLTHVLQQ-IYTTLYVEFVVKHPLYTHV 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,461
Number of Sequences: 5004
Number of extensions: 47684
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)