Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2348
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0771 - 23013984-23014358,23015168-23015980                       29   4.6  
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952...    29   4.6  
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301     29   4.6  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           29   4.6  
08_01_1086 - 11150017-11151564                                         29   4.6  
01_05_0645 - 23899579-23904483                                         29   4.6  
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91...    28   6.1  
02_02_0537 + 11308195-11309667                                         28   8.0  

>12_02_0771 - 23013984-23014358,23015168-23015980
          Length = 395

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 203 RVHSLNGVLFLFKEFY--DYVITELRFSIDYVDH 298
           + H+LNG+ + FK F   D  ITE R  I  + H
Sbjct: 203 KAHALNGLAYYFKNFVPSDQKITEKRAKIQDIPH 236


>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
            9527440-9527767
          Length = 1505

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 203  RVHSLNGVLFLFKEFY--DYVITELRFSIDYVDH 298
            + H+LNG+ + FK F   D  ITE R  I  + H
Sbjct: 1044 KAHALNGLAYYFKNFVPSDQKITEKRAKIQDIPH 1077


>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
          Length = 1116

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 203 RVHSLNGVLFLFKEFY--DYVITELRFSIDYVDH 298
           + H+LNG+ + FK F   D  ITE R  I  + H
Sbjct: 655 KAHALNGLAYYFKNFVPSDQKITEKRAKIQDIPH 688


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 203 RVHSLNGVLFLFKEFY--DYVITELRFSIDYVDH 298
           + H+LNG+ + FK F   D  ITE R  I  + H
Sbjct: 896 KAHALNGLAYYFKNFVPSDQKITEKRAKIQDIPH 929


>08_01_1086 - 11150017-11151564
          Length = 515

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 203 RVHSLNGVLFLFKEFY--DYVITELRFSIDYVDH 298
           + H+LNG+ + FK F   D  ITE R  I  + H
Sbjct: 54  KAHALNGLAYYFKNFVPSDQKITEKRAKIQDIPH 87


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 203  RVHSLNGVLFLFKEFY--DYVITELRFSIDYVDH 298
            + H+LNG+ + FK F   D  ITE R  I  + H
Sbjct: 1173 KAHALNGLAYYFKNFVPSDQKITEKRAKIQDIPH 1206


>03_01_0115 -
           915142-915321,915397-915631,916301-916386,916474-916590,
           917271-917591,918386-918772
          Length = 441

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 437 HFHDHLETIY*LNQNTQLVQYS*P 508
           H HDH+ET+Y   ++  ++QY+ P
Sbjct: 325 HLHDHVETLYMDIRHKAIIQYTLP 348


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 203 RVHSLNGVLFLFKEFY--DYVITELRFSIDYVDH 298
           + H+LNG+ + FK F   D  ITE R  +  + H
Sbjct: 54  KAHALNGLAYYFKNFVPSDQKITEKRAKLQDIPH 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,933,720
Number of Sequences: 37544
Number of extensions: 253302
Number of successful extensions: 565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)