Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2348
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    28   7.2  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    28   7.2  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    28   7.2  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    28   7.2  
AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
           beta protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 20  SIHMDFKTYLSNVTIQYKKKSVNRFLNTNRKKNHKDIPRG 139
           ++H    ++  +  + Y K+S   F+N N++++ +  P+G
Sbjct: 779 NLHFHMSSFSESTGLGYLKQSAPEFVNYNKRQSSRIYPKG 818


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
           beta homolog EGL-8 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 20  SIHMDFKTYLSNVTIQYKKKSVNRFLNTNRKKNHKDIPRG 139
           ++H    ++  +  + Y K+S   F+N N++++ +  P+G
Sbjct: 780 NLHFHMSSFSESTGLGYLKQSAPEFVNYNKRQSSRIYPKG 819


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
           defective protein 8,isoform a protein.
          Length = 1419

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 20  SIHMDFKTYLSNVTIQYKKKSVNRFLNTNRKKNHKDIPRG 139
           ++H    ++  +  + Y K+S   F+N N++++ +  P+G
Sbjct: 780 NLHFHMSSFSESTGLGYLKQSAPEFVNYNKRQSSRIYPKG 819


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
           defective protein 8,isoform b protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 20  SIHMDFKTYLSNVTIQYKKKSVNRFLNTNRKKNHKDIPRG 139
           ++H    ++  +  + Y K+S   F+N N++++ +  P+G
Sbjct: 780 NLHFHMSSFSESTGLGYLKQSAPEFVNYNKRQSSRIYPKG 819


>AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical
           protein C05C8.5 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 359 GNAKVSLSDPIFIGHCETCPYDPRNR 282
           G  K+S S P+F   CE C  D  NR
Sbjct: 211 GYKKISASSPMFSVDCEMCETDVANR 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,051
Number of Sequences: 27780
Number of extensions: 260915
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)