Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2348
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 430 PITLSRSLRNDLLIEP-KHSTRSVFIAAYV*FFIYWIPTRNHIRSFEYQTRHNRSLHRDF 606
           P T +  +R  ++  P K  T +     +   F Y+   R +  +++   RHN SLH+ F
Sbjct: 506 PFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYF---RRNAATWKNAVRHNLSLHKCF 562


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 553 IRSFEYQTRHNRSLHR-DFEKQQWQSNILKNNRYRNTC 663
           I S   +T HN + ++ ++    + +N   NN Y N C
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNN-YNNNC 351


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 47  LSNVTIQYKKKSVNRFLNTNRKKNHKD 127
           +S+++  YK  + N + N N+K  +K+
Sbjct: 82  ISSLSNNYKYSNYNNYNNYNKKLYYKN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,357
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)