Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2346
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    28   1.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   1.9  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   5.9  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   5.9  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   5.9  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   7.8  

>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 468 HRIVRAELWTVDSTCTGPDIHNIQSGFRL 382
           HR+V+   + +D  CTGP    IQ   RL
Sbjct: 149 HRLVQYFAFCIDHFCTGPSDSRIQEKIRL 177


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 99  IRCISPSLSHACDVTRPYRACECKFL*GRDRERASTARISP 221
           +RC + SL H C +   YRAC   F   +  +R      SP
Sbjct: 720 LRCFA-SLLHNCCIFYAYRACSSLFGENKSHKRIEKTNTSP 759


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 386 RNPLCMLCISGPVHVESTVHSSARTI-RCSCQTSTI*Y--VTRGGY 514
           RN +C L I  P H  S V +    + RC  Q +++ Y  + R GY
Sbjct: 433 RNSICWLWIKNPTHAISRVEAQGVCVDRCLFQLASLAYEFLVRYGY 478


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -3

Query: 453 AELWTVDSTCTGPDIHNIQSGFRLKSKKFTFRCSVGSCDV--TNVRERCRDACSLSLSLK 280
           +E  T+DST +   + NIQ      +KK   +  V + D+  +N  +  +D+   +L+  
Sbjct: 49  SEKETIDSTKSKISLENIQQEMGALAKKIFHKLGVKATDLGFSNEHDDSQDSLQ-TLAPS 107

Query: 279 EIYIPML 259
             Y+P+L
Sbjct: 108 PSYVPLL 114


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 341 VTSRTCERDAEMRALSLSLSKKFTFRCSVGSCD 243
           +T RTCE   E +    +L K  TFR + G  D
Sbjct: 880 ITKRTCEHLLEHKQFESTLKKVATFRNAEGIND 912


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 579 LD*TRIWI*GYKVSAYNSLVLVYPPRVTYYIVLV*QEHRIVRAELWTVDST 427
           +D + IW+   K   Y + V+VYP  V +  V +   H +    +W V  T
Sbjct: 255 MDTSDIWLALSKCLNYVNTVIVYPIFVIFVFVWIYMRHYLNFKIMWAVWGT 305


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 RSTARHAQSDALVKLVQYNMSHGEGIRE 521
           R T RH  + +  + +    SHGEG RE
Sbjct: 495 RMTQRHKNTSSWTRKMLERASHGEGTRE 522


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +1

Query: 397 LYVVYIRACT-RGVHGPQLGTHN-----PMLLSN*YNIICHTGRVYEN*AVVCTNFIALY 558
           L+V Y+R CT + +   Q   H      P   +N  ++I    ++      +C NF++L 
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAPHYYYALVPFRATNTASLIYFASQLCRLTLPLCYNFVSLQ 458

Query: 559 PY 564
           PY
Sbjct: 459 PY 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,774
Number of Sequences: 5004
Number of extensions: 58197
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)