Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2346
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365...    29   4.7  
04_03_0091 - 11043023-11043090,11043458-11043566,11044431-110445...    29   4.7  

>05_06_0126 -
           25834129-25834214,25834595-25834658,25836201-25836521,
           25836912-25837040,25837118-25837177,25837251-25837548,
           25837622-25837776,25837959-25838097,25838185-25838266,
           25838337-25838455,25838537-25838664,25838810-25838983,
           25839052-25839203,25839393-25839425,25840362-25841331,
           25841412-25841537
          Length = 1011

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 463 DCACRAVDRGLHVYRP 416
           DC CR  +RGLHV  P
Sbjct: 295 DCVCRTCNRGLHVKHP 310


>04_03_0091 -
           11043023-11043090,11043458-11043566,11044431-11044577,
           11044678-11044776,11044857-11044982,11045448-11045582,
           11046391-11046468,11046553-11046678,11046828-11046968
          Length = 342

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 145 LVTSQACERDGEMHRMHALL 86
           ++ SQAC  D E+HRMH  L
Sbjct: 76  VLESQACADDNELHRMHTWL 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,559
Number of Sequences: 37544
Number of extensions: 375632
Number of successful extensions: 877
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)