Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2346
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC146761-1|AAI46762.1| 1534|Homo sapiens slit homolog 1 (Drosoph... 32 1.7
AL512424-5|CAI14258.1| 1534|Homo sapiens slit homolog 1 (Drosoph... 32 1.7
AL442123-4|CAH70918.1| 1534|Homo sapiens slit homolog 1 (Drosoph... 32 1.7
AB017167-1|BAA35184.1| 1534|Homo sapiens Slit-1 protein protein. 32 1.7
AB011537-1|BAA32465.3| 1618|Homo sapiens MEGF4 protein. 32 1.7
U88881-1|AAC34136.1| 365|Homo sapiens Toll-like receptor 5 prot... 30 6.9
BC109119-1|AAI09120.1| 858|Homo sapiens TLR5 protein protein. 30 6.9
BC109118-1|AAI09119.1| 858|Homo sapiens TLR5 protein protein. 30 6.9
AL929091-1|CAM28378.1| 858|Homo sapiens toll-like receptor 5 pr... 30 6.9
AF051151-1|AAC34376.1| 858|Homo sapiens Toll/interleukin-1 rece... 30 6.9
AB060695-1|BAB43955.1| 858|Homo sapiens Toll-like receptor 5 pr... 30 6.9
>BC146761-1|AAI46762.1| 1534|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1534
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 393 GFRLKSKKFTFRCSVGSCDVTNVRERCRDACSL 295
G RLK +KFTF CS G+ V + + C+L
Sbjct: 1500 GLRLKRRKFTFECSDGTSFAEEVEKPTKCGCAL 1532
>AL512424-5|CAI14258.1| 1534|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1534
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 393 GFRLKSKKFTFRCSVGSCDVTNVRERCRDACSL 295
G RLK +KFTF CS G+ V + + C+L
Sbjct: 1500 GLRLKRRKFTFECSDGTSFAEEVEKPTKCGCAL 1532
>AL442123-4|CAH70918.1| 1534|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1534
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 393 GFRLKSKKFTFRCSVGSCDVTNVRERCRDACSL 295
G RLK +KFTF CS G+ V + + C+L
Sbjct: 1500 GLRLKRRKFTFECSDGTSFAEEVEKPTKCGCAL 1532
>AB017167-1|BAA35184.1| 1534|Homo sapiens Slit-1 protein protein.
Length = 1534
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 393 GFRLKSKKFTFRCSVGSCDVTNVRERCRDACSL 295
G RLK +KFTF CS G+ V + + C+L
Sbjct: 1500 GLRLKRRKFTFECSDGTSFAEEVEKPTKCGCAL 1532
>AB011537-1|BAA32465.3| 1618|Homo sapiens MEGF4 protein.
Length = 1618
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 393 GFRLKSKKFTFRCSVGSCDVTNVRERCRDACSL 295
G RLK +KFTF CS G+ V + + C+L
Sbjct: 1584 GLRLKRRKFTFECSDGTSFAEEVEKPTKCGCAL 1616
>U88881-1|AAC34136.1| 365|Homo sapiens Toll-like receptor 5
protein.
Length = 365
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 688 KLYVIIIMTILVLNFLVLYLIYQKIKPACFVCHEFSSRL 572
K + I+ T+ + FL+ L K + CF+C++ + RL
Sbjct: 146 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 184
>BC109119-1|AAI09120.1| 858|Homo sapiens TLR5 protein protein.
Length = 858
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 688 KLYVIIIMTILVLNFLVLYLIYQKIKPACFVCHEFSSRL 572
K + I+ T+ + FL+ L K + CF+C++ + RL
Sbjct: 639 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 677
>BC109118-1|AAI09119.1| 858|Homo sapiens TLR5 protein protein.
Length = 858
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 688 KLYVIIIMTILVLNFLVLYLIYQKIKPACFVCHEFSSRL 572
K + I+ T+ + FL+ L K + CF+C++ + RL
Sbjct: 639 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 677
>AL929091-1|CAM28378.1| 858|Homo sapiens toll-like receptor 5
protein.
Length = 858
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 688 KLYVIIIMTILVLNFLVLYLIYQKIKPACFVCHEFSSRL 572
K + I+ T+ + FL+ L K + CF+C++ + RL
Sbjct: 639 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 677
>AF051151-1|AAC34376.1| 858|Homo sapiens Toll/interleukin-1
receptor-like protein 3 protein.
Length = 858
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 688 KLYVIIIMTILVLNFLVLYLIYQKIKPACFVCHEFSSRL 572
K + I+ T+ + FL+ L K + CF+C++ + RL
Sbjct: 639 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 677
>AB060695-1|BAB43955.1| 858|Homo sapiens Toll-like receptor 5
protein.
Length = 858
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 688 KLYVIIIMTILVLNFLVLYLIYQKIKPACFVCHEFSSRL 572
K + I+ T+ + FL+ L K + CF+C++ + RL
Sbjct: 639 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 677
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,790,255
Number of Sequences: 237096
Number of extensions: 2119292
Number of successful extensions: 4687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4685
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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