Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2346
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z48621-8|CAA88548.2|  180|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    29   2.4  
AB038499-1|BAB11964.1|  180|Caenorhabditis elegans galectin LEC-...    29   2.4  
Z83240-1|CAB05815.2|  373|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY204178-1|AAO39182.1|  373|Caenorhabditis elegans nuclear recep...    29   3.2  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81041-4|CAB02789.1|  108|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
            protein M01G12.12 protein.
          Length = 1579

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 284  SKKFTFRCSVGSCDVTNVRKRWRNACSACSLSVSPSKKFTFA 159
            S  F FRC   + ++      W  AC  C+ S    +K +FA
Sbjct: 1204 SNFFNFRCENPNEEIRKKAVAWYRACYECAKSTREPRKLSFA 1245


>Z48621-8|CAA88548.2|  180|Caenorhabditis elegans Hypothetical
           protein R07B1.10 protein.
          Length = 180

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 400 YVVYIRACTRGVHGPQLGTHNPMLLSN*YNIICHTGRVY 516
           ++V +  CT G  G ++  HNP+   + +N+  H    Y
Sbjct: 61  HIVAMNTCTNGAWGAEIRHHNPLKHHDHFNLSIHVHEGY 99


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
            protein M01G12.12 protein.
          Length = 1579

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 284  SKKFTFRCSVGSCDVTNVRKRWRNACSACSLSVSPSKKFTFA 159
            S  F FRC   + ++      W  AC  C+ S    +K +FA
Sbjct: 1204 SNFFNFRCENPNEEIRKKAVAWYRACYECAKSTREPRKLSFA 1245


>AB038499-1|BAB11964.1|  180|Caenorhabditis elegans galectin LEC-8
           protein.
          Length = 180

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 400 YVVYIRACTRGVHGPQLGTHNPMLLSN*YNIICHTGRVY 516
           ++V +  CT G  G ++  HNP+   + +N+  H    Y
Sbjct: 61  HIVAMNTCTNGAWGAEIRHHNPLKHHDHFNLSIHVHEGY 99


>Z83240-1|CAB05815.2|  373|Caenorhabditis elegans Hypothetical
           protein T23H4.2 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 290 SLSKKFTFRCSVG-SCDVTNVRKRWRNACSACSL 192
           S+ K++ ++C    +CDVT   K  RNAC AC L
Sbjct: 33  SIRKRYHYQCRFEQNCDVT---KNKRNACRACRL 63


>AY204178-1|AAO39182.1|  373|Caenorhabditis elegans nuclear receptor
           NHR-69 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 290 SLSKKFTFRCSVG-SCDVTNVRKRWRNACSACSL 192
           S+ K++ ++C    +CDVT   K  RNAC AC L
Sbjct: 33  SIRKRYHYQCRFEQNCDVT---KNKRNACRACRL 63


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 382 EIKE-IYIQMLGRVL*RHERAREMPRCVLSLSLSQRNLHS 266
           E KE I I  LG V+   ER  E P C++ L   Q +LH+
Sbjct: 304 EKKEAISIGYLGNVVDLWERLAEEPECLVELGSDQTSLHN 343


>Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical
           protein C27A7.5c protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 275 FTFRCSVGSCDVTNVRKRWRNACSACSLSVSPSKKFT 165
           F  + S G+C   N+R   R +C++  LSVSP K  T
Sbjct: 26  FIKKMSDGTCPPINIR---RCSCTSDGLSVSPKKSLT 59


>Z81041-4|CAB02789.1|  108|Caenorhabditis elegans Hypothetical
           protein C27A7.5b protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 275 FTFRCSVGSCDVTNVRKRWRNACSACSLSVSPSKKFT 165
           F  + S G+C   N+R   R +C++  LSVSP K  T
Sbjct: 26  FIKKMSDGTCPPINIR---RCSCTSDGLSVSPKKSLT 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,795
Number of Sequences: 27780
Number of extensions: 339707
Number of successful extensions: 840
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)