Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2345
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 33 0.028
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 31 0.085
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.11
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 28 0.80
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.1
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 1.1
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 27 1.4
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 27 1.8
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 27 2.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 3.2
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 26 4.2
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 4.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.6
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 5.6
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 25 5.6
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 5.6
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 25 5.6
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 7.4
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 7.4
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.4
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 7.4
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.4
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.4
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.8
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 9.8
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 9.8
SPAC13F5.07c |||previusly annotated as dubious, may not be prote... 25 9.8
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 9.8
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 33.1 bits (72), Expect = 0.028
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Frame = -3
Query: 447 NEETKTNDTVLKKTDSNSSLSVSPCRSPEPSEET--SFNTFVVTKKSPTDIVDFISH--- 283
+EET +T L+ ++ S SP SPE + + +P V+ +H
Sbjct: 120 SEETPLKETSLELSEEEIITSKSPIPSPETIHKNIDVEEKETIEPTTPVKEVETTAHAEE 179
Query: 282 EKDDIVKTS-----VLSAHFPDKTSKTPRDGSPTKLQDLTQNIYEKHGNESHVYEEK--- 127
EK + S L+ +K+S+ ++ + T+ +E+ GNE +V K
Sbjct: 180 EKGPLTPDSEYAARQLTEELANKSSQEEGVDKQLRVVEATEKEHEEDGNEENVTVTKPVE 239
Query: 126 -ITLQSKTKDVRKSPEKQTGLPNKP 55
T Q ++K+V+K +T P P
Sbjct: 240 VATDQVESKEVKKKEVSETTEPTAP 264
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 31.5 bits (68), Expect = 0.085
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
Frame = -3
Query: 456 MIENEETKTND-TVLKKTDSNSSLSVSPCRSPEPSEETSFNTFVVTKKSPTDIVDFISHE 280
++ N+ K ++++ + S+S SP RS PS+ + N + S +D
Sbjct: 452 LVTNDRVKVKSPSLIQSSTGYGSMSQSPSRSDLPSKISRVNAELQAHGSQRSSIDVSKEN 511
Query: 279 KDDIVKTSVLSAHFPDKTSKTPRDGSPTKLQDLTQNIYEKHGNE 148
K + AH + S P + P + E +GN+
Sbjct: 512 KSSVADGPSSQAH--NGPSTQPPEALPNGTDPSSSKTTENNGNQ 553
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 31.1 bits (67), Expect = 0.11
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = -3
Query: 432 TNDTVLKKTDSNSSLSVS--PCRSPEPSEETSFNTFVVTKKSPTDIVDF-ISHEKDDIVK 262
+N V+K D++SSLS S P + +T + +P+ + E+ D +
Sbjct: 226 SNGNVIKGLDTSSSLSSSSHPSHEALSTIDTKNLQALAASAAPSSCRQQPVDEERQD--R 283
Query: 261 TSVLSAHFPDKTSKTPRDGSPTKLQDLTQNIYEKHGNE 148
S +S HF D + + SPT+L T H +E
Sbjct: 284 VSKISKHFQDSGTPVSEEVSPTRLPSPTSARRASHLSE 321
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 28.3 bits (60), Expect = 0.80
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Frame = -3
Query: 327 VTKKSPTDI---VDFISHEKDDIVKTSVLSAHFPDKTSKTPRDGSPTKLQDLTQNIYEK- 160
V KK DI +D + D IV+ +L A + + D ++ K
Sbjct: 79 VNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDEEDEERCRKMASDASEEKDRKI 138
Query: 159 HGNESHVYEEKITLQSKTKDVRKSPEKQTGLPNKPDDSEHFKLPKP 22
E EEK +Q K ++ +++ +PNK +E + P P
Sbjct: 139 EEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSP 184
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -3
Query: 399 NSSLSVSPCRSPEPSEETSFNTFVVTKKSPTDIVDFISHEKDDIVKTSVLSAHFPDKTSK 220
N L SP +P+P ++ FN + T IV +HE DD S S + + +S
Sbjct: 1284 NFMLERSPLATPKPLKQPDFNIY------ETPIVRSTAHETDDEQTPSKYSDNRVESSSD 1337
Query: 219 TPRDGSPTKLQDLTQ 175
T + + K + Q
Sbjct: 1338 TVFENTDLKYDNNVQ 1352
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 170 FMKNTETK-AMFMKKRLHYSPKQKTLGKVQKNKRVYQINPMIVNILNFP 27
F K T K A +K+ H S K + +KN++ ++N NI N P
Sbjct: 1115 FAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKLNEQNPNIRNVP 1163
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 198 TKLQDLTQNIYEKHGNESHVYEEKITLQSKTKDVRKSP 85
TKLQDL + + E H+ E + L KD K P
Sbjct: 539 TKLQDLRRGNLPEEFVEQHICESSLILWMTAKDPTKRP 576
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 528 TQK-AKTSSLKGVRHMKTDVVRYLGMIENEETKTNDTVLKKTDSNSSLSVSPCRSPEPSE 352
TQ+ +T + +K + + + ++E K +L+ +D + S S PCR P P E
Sbjct: 173 TQRPCETPPTPSIEALKRKELSSVTLTYDDEEKKTIKILQLSDLHYSNSDRPCRDPYPYE 232
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = -3
Query: 531 YTQKAKTSSLKGVRHMKTDVVRYLGMIENEETKTNDTVLKKTDSNSSLSVSPCRSPEPSE 352
+T++ ++ L + H V+ + ++ + + T+ K D +SSL + +PS
Sbjct: 224 FTKEISSAGLDHINHFSEIVMLGVDLLYRDYVSYDTTISLKNDDSSSLGDMEFETSQPSS 283
Query: 351 ETS 343
S
Sbjct: 284 SIS 286
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 3.2
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 317 FFVTTKVLKEVSSLGSGLRQGETLSELL---LSVFFNTVSFVLVSSFSIMPRYLTTSV-F 484
F ++LKEV LGS + + S + L++F N VSF ++ + +P + T SV +
Sbjct: 1248 FLFCLEMLKEVKELGSTFKSISSTSFKVYSQLTIFANRVSF---NNSTAIPFFSTKSVLW 1304
Query: 485 ICLTPFKE 508
C F+E
Sbjct: 1305 YCNRLFQE 1312
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 183 LTQNIYE-KHGNESHVYEEKITLQSKTKDVRKSPEKQTGLPNKPDDSE 43
LT+ + E KHGN+S + + + K K K +++ G NK DD +
Sbjct: 104 LTEKVDEFKHGNDSLLARKVQRIVKKKKQREKKSKRKYG--NKIDDQD 149
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.8 bits (54), Expect = 4.2
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Frame = -3
Query: 519 AKTSSLKGVRHMKTDVVRYLGM-IENEETKTNDTVLKKTDSNSSLSVSPCRSPEPSEETS 343
++ S+ R+ K ++LG+ N + N + + + S S P S ++
Sbjct: 11 SRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYPMASRDSM 70
Query: 342 FNTFVVTKKSPTDIVDFISHEKDDIVKTSVLSAHFPDKTSKTPRDGSP 199
++ K +P D ++SH + + S S+ + T D +P
Sbjct: 71 KESYDKNKGTPPDYTSYVSHSDAEPEQASSKSSTSIEDLLHTEYDDAP 118
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 465 YLGMIENEETKTNDTVLKKTDSNSSLSVSPCRSPEPSEETSFNTFVVT 322
Y+ ++N+E ND +L L++S S P E+ S NT + T
Sbjct: 2155 YIFKVDNDEFPKNDNILDGFQEKVILTISDFAS-IPFEKLSLNTKLST 2201
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = -3
Query: 339 NTFVVTKKSPTD-IVDFISHEKDDIVKTSVLSAHFPDKTSKTPRDGSPTKLQDLTQNIYE 163
N F +P D F+ + K S+ P + + R T+ + TQNI
Sbjct: 288 NEFFPMDVTPNDGSAQFVVYNMSGNPKKQTTSSKGPTRLYEVARFNCTTRGCEYTQNIPC 347
Query: 162 KHGNESHVYE 133
SH YE
Sbjct: 348 PRAGHSHTYE 357
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 137 MKKRLHYSPKQKTLGKVQKNKRVYQINPMIVNILNFP 27
+K R H+ PK T V +K + + ++N ++FP
Sbjct: 349 IKSRFHWYPKSSTRFAVALSKHIIFFDLDLLNNISFP 385
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 214 KRWLSDQTSRSNSKYL 167
K WLS + S S SKYL
Sbjct: 170 KNWLSSELSHSTSKYL 185
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 159 HGNESHVYEEKITLQSKTKDVRKSPEKQTGLPNKPDDSEHFKLPKPYEPIEK 4
H ES + KI + TK+ P++ + LPN DSE F + + + +EK
Sbjct: 46 HRQESLIESAKIAYLN-TKNT--PPKEDSMLPNLKKDSEDFDMDEFVKELEK 94
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -3
Query: 447 NEETKTNDTVLKKTDSNSSLSVSPCRSPEPSEETSFNTFVVTKKSPTDIVDFISHEK 277
NEE + T ++ SV SP+PS S + K +P++ V ++ EK
Sbjct: 444 NEERRRLSAAATATPMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNPSESV-VVASEK 499
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 447 NEETKTNDTVLKKTDSNSSLSVSPCRSPEPSEE 349
NEE T T++ +D+N ++ P PSEE
Sbjct: 592 NEEAHTGPTIIIPSDNNEKVTTLPA-GHVPSEE 623
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 37 KMFTIIGFIW*TRLFFWTFPNVFCFGL*CNLFFINMAFVSVFF 165
++F+I+ +W L+F + FCFG+ I ++ ++V+F
Sbjct: 504 ELFSILDSLWFHPLYFMFGFSFFCFGILVTT-CIMVSIITVYF 545
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 7.4
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = -3
Query: 432 TNDTVLKKTDSNSSLSVSPCRSPEPSEETSFNTFVVTKKSPTDIVDFISHEKDDIVK-TS 256
T +V+ +++ S S + P+E T + T T PT +D S V TS
Sbjct: 224 TTTSVINYIGASTLESSSLTNTVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTS 283
Query: 255 VLSAHFPDKTSKTPRDGSPTKLQDLT 178
++ T D +P+ + T
Sbjct: 284 SSTSSSGSSQDSTTIDSTPSTIATST 309
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 7.4
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Frame = -3
Query: 399 NSSLSVSPCRSPEPSEETSFNTFVVTKKSPTDIVDFISHEKDDIVKTSVLSAHFPDKTSK 220
+S LS S +SP + ++ K+PT+ V+ +S + TSV+S P +T+
Sbjct: 321 SSPLSFSASKSPAAVDSST--------KTPTEQVNVVSKQAPTTSSTSVISPD-PLQTA- 370
Query: 219 TPRDGSPTKLQDLTQNIYEKH---GNESHVYEEKITLQSKTKDVRKSPEKQTGLPNKPD 52
P + L + + GN V ++ +TK + K + P PD
Sbjct: 371 APSANVNEVIASLESKVVTRRTGSGNNYRVGLRNVSGSERTKSLSKESPVEPEKPALPD 429
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 108 TKDVRKSPEKQTGLPNKPDDSEHFKLPKP 22
+ D++ +P K+T N+ DDS K KP
Sbjct: 247 SNDIKHTPNKETQPSNQVDDSLKSKDSKP 275
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 24.6 bits (51), Expect = 9.8
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -3
Query: 510 SSLKGVRHMKTDVVRYLGMIENEETKTNDTVLKKTDSNSSLSVSPCRSPEPSEETSFNTF 331
SSL GV + +R++G +++ + S S SVS RS F
Sbjct: 306 SSLMGVESYLAERLRFIG---ESIRRSSQQIFSSLQSAKSASVSFSRSYIDWNPEGFMFH 362
Query: 330 VVTKKSP--TDIVDFISH 283
TKKS T + +FIS+
Sbjct: 363 SKTKKSSFNTSLGEFISN 380
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 246 AHFPDKTSKTPRDGSP 199
+ FPD+ TPRDG P
Sbjct: 240 SQFPDQYRFTPRDGKP 255
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 9.8
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = -3
Query: 498 GVRHMKTDVVRYLGMIENEETKTNDTVLKKTDS---NSSLSVSPCRSP-EPSEETSFNTF 331
G+ + D+ Y G ++EE + + TD N+S P P EP+ ETS
Sbjct: 391 GLDNNYEDIPLY-GPSKDEELIKKEELEADTDLGLINTSEINQPANLPDEPTAETSNPVS 449
Query: 330 VVTKKSPTDIVDFISHEKDDIVKTSV 253
T ++ T D EK+D V V
Sbjct: 450 ATTVEAVTTTADNKDEEKNDHVTEDV 475
>SPAC13F5.07c |||previusly annotated as dubious, may not be protein
coding|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 24.6 bits (51), Expect = 9.8
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = -3
Query: 279 KDDIVKT----SVLSAHFPDKTSKTPRDGSPTKLQDLTQNIYEKHGNESHVYEEKITLQS 112
+DDIV + + LS + DK +G ++ + K G + +V +K+ S
Sbjct: 11 EDDIVNSLDGITALSQEWIDKVVDAINEGHVSESDERESR---KLGEKMNVNSQKLKTSS 67
Query: 111 KTKDVRKSPEKQTGLPNKPDDSE 43
K VRK+ T + + DS+
Sbjct: 68 PPKVVRKNKRHHTTVKSVLSDSD 90
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 447 NEETKTNDTVLKKTDSNSSLSVSPCRSPEPSEETSFNTF 331
NEE+ T+ N+S S+SP S + E TF
Sbjct: 34 NEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQRKRTF 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,606
Number of Sequences: 5004
Number of extensions: 45448
Number of successful extensions: 209
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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