Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2344
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    29   0.49 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.5  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   6.1  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   8.0  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 568 GY-P*PLQRRYGDRRYSPDSRYSPQRRYSPESRY 470
           GY P P Q+ YG   Y P  +  PQ+ Y+P   Y
Sbjct: 11  GYAPAPPQQAYGGPNYYPPQQNYPQQGYAPPQGY 44


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 317 RIPFGQ-SIEEHAATEQIPEAFRSQLWLRL 231
           R+ F + S+EE  + ++IPEA+R+ L+  L
Sbjct: 559 RVIFAKPSVEESESLQKIPEAYRTHLFFLL 588


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 508 YSPQRRYSPESRYSPETV 455
           ++PQ   SPES YSPE +
Sbjct: 292 HNPQTPSSPESAYSPENL 309


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 172 SVGGLYEYFNKYFIYRIPRNNLSQSWDL 255
           S+GG   Y N+ +     +N L Q+WDL
Sbjct: 29  SLGGWLTYGNEGYDVEHTKNCLKQAWDL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,573
Number of Sequences: 5004
Number of extensions: 33766
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)