Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2344
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0120 - 828834-831143                                             30   1.5  
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     29   2.0  
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    29   3.5  
07_01_0169 - 1182240-1182253,1182887-1182964,1183518-1184640           28   6.2  

>05_01_0120 - 828834-831143
          Length = 769

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 255 ECLWYLLRRRVLLDGLSEGYSDSVSGALRDLDPQL 359
           E  W  LRR+ +   L+  YSD  S  +RDLDP++
Sbjct: 455 ESTWSSLRRKFISRSLARVYSD--SALIRDLDPRV 487


>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +1

Query: 262 SGICSVAACSSMDCPKGIRI---LFRARYET 345
           +G CS A C   D PKGIR     F A Y T
Sbjct: 178 NGSCSGAGCCQADIPKGIRYYQGYFNANYNT 208


>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = -1

Query: 532 RRYSPDSRYSPQRRYSPESRYSPE 461
           RRYSP   YSP  R    SRYSPE
Sbjct: 121 RRYSPS--YSPVERDRYSSRYSPE 142


>07_01_0169 - 1182240-1182253,1182887-1182964,1183518-1184640
          Length = 404

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 217 RIPRNNLSQSWDLNASGICSVAACSSMDCPKG 312
           R+PR +L       A+ +CS   C+ +DC  G
Sbjct: 134 RLPRPDLPYFMSYAAAVLCSAVGCNHLDCRGG 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,207,212
Number of Sequences: 37544
Number of extensions: 206735
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)