Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2344
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    27   7.3  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    27   7.3  
AF000196-3|AAL11097.1|  199|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 219 DSEEQPEPELGPECLWYLLRRRVLLDGLSEGYSDSVSG 332
           D+E+ PEP   P  +W     ++    +S+ + D + G
Sbjct: 152 DNEQPPEPGSDPRKIWAFKAAKMKCQAISKLHQDKIKG 189


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 526 YSPDSRYSPQRRYSPESRYSPE 461
           Y+PDS Y+P  +YS   + SP+
Sbjct: 205 YAPDSNYAPYYQYSNNMQSSPQ 226


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 526 YSPDSRYSPQRRYSPESRYSPE 461
           Y+PDS Y+P  +YS   + SP+
Sbjct: 180 YAPDSNYAPYYQYSNNMQSSPQ 201


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 219 DSEEQPEPELGPECLWYLLRRRVLLDGLSEGYSDSVSG 332
           D+E+ PEP   P  +W     ++    +S+ + D + G
Sbjct: 153 DNEQPPEPGSDPRKIWAFKAAKMKCQAISKLHQDKIKG 190


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 526 YSPDSRYSPQRRYSPESRYSPE 461
           Y+PDS Y+P  +YS   + SP+
Sbjct: 180 YAPDSNYAPYYQYSNNMQSSPQ 201


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 526 YSPDSRYSPQRRYSPESRYSPE 461
           Y+PDS Y+P  +YS   + SP+
Sbjct: 205 YAPDSNYAPYYQYSNNMQSSPQ 226


>AF000196-3|AAL11097.1|  199|Caenorhabditis elegans Hypothetical
           protein B0041.8 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 523 SPDSRYSPQRRYSPESRYSPE 461
           +P S Y+   RY P++RY+PE
Sbjct: 138 TPKSAYNTLARYYPKNRYTPE 158


>Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.13 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 256 NASGICSVAACSSM--DCPKGIRILFRARYETLIHNYLRIYLWNVFCWVWASRATGEAGA 429
           +A G C+   C     DC   IRI   A  ET +  Y +       C   AS  T  + A
Sbjct: 149 SACGFCNEGGCVDAIPDCANDIRICTAAGLETFVATYCQ-----RTCGKCASSTTTRSSA 203

Query: 430 SSG 438
           S+G
Sbjct: 204 STG 206


>Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.10 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 256 NASGICSVAACSSM--DCPKGIRILFRARYETLIHNYLRIYLWNVFCWVWASRATGEAGA 429
           +A G C+   C     DC   IRI   A  ET +  Y +       C   AS  T  + A
Sbjct: 149 SACGFCNEGGCVDAIPDCANDIRICTAAGLETFVATYCQ-----RTCGKCASSTTTRSSA 203

Query: 430 SSG 438
           S+G
Sbjct: 204 STG 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,134
Number of Sequences: 27780
Number of extensions: 184039
Number of successful extensions: 465
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)