Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2343
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    25   0.58 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.1  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 112 NNSYVRRNWNNQPQSSNTND 171
           NNS + +N+N+ P+S+ +N+
Sbjct: 409 NNSILIKNFNDSPESNRSNE 428


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 433 IFYCIVLIICCI 398
           +FYC+++I+ CI
Sbjct: 227 LFYCVLIILLCI 238



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 216 LINTFITLHLQFYYQLIIHTKKSYMPSKSLFLSLQIHYSLHYY 344
           L + + T+HL FY   II T    + +   + +  I   ++Y+
Sbjct: 74  LCSGYFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYF 116



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 451 FVRVLSIFYCIVLIICCI 398
           F+  +  FYC ++I+ CI
Sbjct: 281 FLLCIYYFYCALIILLCI 298


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 322 ICNDKKRLFDGMYDFFVCI 266
           + ND++ +F   YD  +C+
Sbjct: 456 VFNDQRTVFANFYDAMICV 474


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,466
Number of Sequences: 336
Number of extensions: 3164
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)