Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2343
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    27   3.4  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    26   4.4  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    25   7.8  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   7.8  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 298 KVFFYHYKYITAYIIINRTYS 360
           K+F YH+ +I  Y II+ +Y+
Sbjct: 2   KLFLYHFTFIVYYFIISFSYA 22


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 NQPQSSNTNDKSKGGVHVRGPA 207
           NQ + SN+N +S G + +RG A
Sbjct: 76  NQTKPSNSNSQSNGAISIRGIA 97


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 609 PIIFFASQYALCATKDSNSLE*ERMIAAAILDSFLYWRGL 490
           PI+ FAS   +C  + +  ++    I   +LD  L  R L
Sbjct: 326 PIVIFASNRGICTIRGTEDIQAPHGIPTDLLDRLLIVRTL 365


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 115 NSYVRRNWNNQPQSSNTNDKSKGG 186
           NS+ RR    + Q S TN++S GG
Sbjct: 17  NSHFRRTVEEKSQLSGTNEESLGG 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,838
Number of Sequences: 5004
Number of extensions: 50457
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)