Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2343
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    30   1.5  
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780...    29   4.6  
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     28   8.0  

>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 14  FFFFYITYLNIIFIKKYNLTIYIYDFTFKLN 106
           F +F + Y +I+F +K  +T    DFTF LN
Sbjct: 85  FLYFMVQYDDILFHEKRRVTSVTIDFTFGLN 115


>04_04_0624 +
           26676765-26676879,26676955-26677093,26678012-26678083,
           26678174-26678317,26678402-26678530,26678819-26678938,
           26679015-26679076,26679937-26680170,26680259-26680485,
           26680551-26680683,26680787-26680944,26681139-26681351,
           26681482-26681730
          Length = 664

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 383 CNTSDDTTNNKYNTIKNRQNTNE-SRVTGRQ 472
           C  ++DTTN   N  +N Q  NE SRV G Q
Sbjct: 247 CFENNDTTNRPDNQCENSQKGNESSRVDGNQ 277


>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
 Frame = -3

Query: 460 DAGFVRVLSIFYC--------IVLIICCIVASITRSMNGLYLNMFDL 344
           D  + R +  FYC        IV+I+   + +I    NG++++MF L
Sbjct: 60  DTHYPRYIMFFYCNAAAFALSIVVIVLIFILAILHEKNGIWISMFPL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,077
Number of Sequences: 37544
Number of extensions: 283555
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)