Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2341
         (562 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79; Magn...    36   0.85 
UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3; Arabi...    36   0.85 
UniRef50_Q4SL05 Cluster: Chromosome 17 SCAF14563, whole genome s...    33   4.6  
UniRef50_UPI0000E487A3 Cluster: PREDICTED: similar to ENSANGP000...    33   6.0  

>UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79;
            Magnoliophyta|Rep: DNA-directed RNA polymerase -
            Arabidopsis thaliana (Mouse-ear cress)
          Length = 1233

 Score = 35.5 bits (78), Expect = 0.85
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 446  Y*MVTRAHRHLQRKFRHPPMSSKISV*LYQLPHPSNRNALLRHGRNRQGGNTYLTR 279
            Y  VT   RH++RK   P +   +SV +    HP   N   RH RN   G+ + +R
Sbjct: 902  YDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSR 957


>UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3;
           Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 1114

 Score = 35.5 bits (78), Expect = 0.85
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 446 Y*MVTRAHRHLQRKFRHPPMSSKISV*LYQLPHPSNRNALLRHGRNRQGGNTYLTR 279
           Y  VT   RH++RK   P +   +SV +    HP   N   RH RN   G+ + +R
Sbjct: 783 YDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSR 838


>UniRef50_Q4SL05 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 17 SCAF14563, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 59

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 328 CCVTAEIGRVAIPTSQDVLPPVNIISSSK 242
           CCV A  G +  P  QDV P V ++SS K
Sbjct: 17  CCVYATAGYIFTPLEQDVTPRVTVMSSGK 45


>UniRef50_UPI0000E487A3 Cluster: PREDICTED: similar to
           ENSANGP00000012471; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to ENSANGP00000012471
           - Strongylocentrotus purpuratus
          Length = 542

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 445 IKWLPEPIDIYNVNSATHL*VLRSQYSY 362
           I+W+ + +D+++   ATHL  L SQY Y
Sbjct: 54  IEWITKLLDVHSTTEATHLATLLSQYGY 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,406,239
Number of Sequences: 1657284
Number of extensions: 11472171
Number of successful extensions: 27420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27415
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)