Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2341
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    30   0.27 
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    27   1.4  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    27   2.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   5.8  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   7.6  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   7.6  

>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 421 DIYNVNSATHL*VLRSQYSYTSCPTLLTETHCCVTAE-IGRVAIPTSQD 278
           ++ N++S++   ++  Q+S   C + L E HC V    IGR+ +  S D
Sbjct: 3   EMINLDSSSEPSIVTKQFSVEECLSKLKEQHCYVPMRTIGRLRLRKSSD 51


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 222 FFHYKPLWEDHSNAKGSHCHGLKTPSVLVSSDTNKPMLKF 103
           FFH    W  HSN    +       S L+S++TN     F
Sbjct: 213 FFHSPTKWITHSNVSNGYYTSRNIMSFLLSNNTNTSSYPF 252


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 477 LSNKNIHIIICLERNMGIPFKSL 545
           +S KN+H++ C+E ++  PF+ L
Sbjct: 303 VSFKNLHVLSCMEDSVMSPFREL 325


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 444 ISKWNVSSST---RLSNKNIHIIICLERNMGI 530
           +S W + S      L N  +H ++CLE+N+ +
Sbjct: 521 VSHWIIGSDAWAYDLGNSALHQVLCLEKNVNL 552


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 171 HCHGLKTPSVLVSSDTNKPMLKFPRH 94
           H   L +P V+VS   N P+    RH
Sbjct: 220 HLRSLDSPGVMVSRKENSPLYTVNRH 245


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 240 YLEEEIIFTGGRTSCEVGIATLPISAVTQQCVSVRRVGQLV*LY*DLRTHRWVAEF 407
           +LE E+ F G R +  VG++   + +   Q  ++++V   + L+  L  +R VA F
Sbjct: 379 FLESELFFKGIRPAINVGLSVSRVGSAA-QVKAMKQVAGQIKLF--LAQYREVASF 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,629
Number of Sequences: 5004
Number of extensions: 50320
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)