Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2341
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0213 + 13087707-13088423                                         29   3.4  
01_06_1582 - 38430573-38430599,38430750-38430857,38431503-384315...    28   5.9  
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168...    27   7.7  

>06_02_0213 + 13087707-13088423
          Length = 238

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 367 SYTSCPTLLTETHCCVTAEIGRVAIPTSQDVLPPVNIISSSKY 239
           +Y     ++   HC VTA   +  +P+S+DV P ++ + SS Y
Sbjct: 171 NYAMFSNMMRVQHC-VTALPNQQFLPSSEDVKPMIHHVPSSSY 212


>01_06_1582 -
           38430573-38430599,38430750-38430857,38431503-38431569,
           38431847-38432070,38432154-38432246,38432665-38432717,
           38433122-38433572
          Length = 340

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 425 HRHLQRKFRHPPMSSKISV*LYQLPHPSNRNALLRHGRNRQGGNTYLTRRPTTSK 261
           H H +R F HPP+SS        L   ++ N   R G   QGG +   RRP   +
Sbjct: 38  HHHHRRAF-HPPLSSLRDPDKATL-RKASPNVPFRLGGGGQGGGSSKDRRPAADQ 90


>10_01_0141 -
           1686827-1687063,1687160-1687315,1688046-1688974,
           1689595-1689640,1689914-1689932,1690751-1690962,
           1691063-1691218,1692240-1693184,1693448-1693597
          Length = 949

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 466 ELTFHFDIKWLPEPIDIYNV 407
           ELTF  +++W PE ID+ N+
Sbjct: 365 ELTFENNLQWCPEFIDVVNL 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,064,804
Number of Sequences: 37544
Number of extensions: 321760
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)