Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2341
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    28   5.3  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   7.0  

>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 370 YSYTSCPTLLTETHCCVTAEIGRV-AIPTSQDVLPP 266
           Y +   P LL    CC+ +EI R  + P  QD  PP
Sbjct: 175 YMHQRAPKLLIPESCCIPSEIERCRSNPFDQDAPPP 210


>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 114 SAYSCHLTQVHWASSSHDNVSLLRYYDPPTMAYNEKIYTSK 236
           S YS H   V  A+   + V L+   DP T+A N K+Y  K
Sbjct: 417 SIYSTHAQDVA-AAVGEETVKLVDRVDPKTVARNCKLYIQK 456


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 114 SAYSCHLTQVHWASSSHDNVSLLRYYDPPTMAYNEKIYTSK 236
           S YS H   V  A+   + V L+   DP T+A N K+Y  K
Sbjct: 417 SIYSTHAQDVA-AAVGEETVKLVDRVDPKTVARNCKLYIQK 456


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 426 GSGNHLISKWNVSSSTR 476
           GSGNH +S+W  +S+TR
Sbjct: 585 GSGNHHLSRWFYNSNTR 601


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,525,979
Number of Sequences: 27780
Number of extensions: 276310
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)