Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2341
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.69 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.69 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.2  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          24   1.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 255 FLLLNIIYWYIFFHYKP--LWED 193
           F LLNI YW I+  Y+    W+D
Sbjct: 480 FGLLNICYWVIYVTYQEEFKWQD 502


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 258 LFLLLNIIYWYIFFHY 211
           LF +LN+ YW +F  Y
Sbjct: 412 LFAVLNVTYWIMFAEY 427


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 255 FLLLNIIYWYIF 220
           FL+LN++YW  F
Sbjct: 371 FLILNVVYWSTF 382


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 499 ICIFLLLRRVDELTFHFDIKWLPE 428
           +CI ++ R+++E   H DI +LPE
Sbjct: 56  VCI-VVRRKLEENWIHVDISFLPE 78


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 261 ILFLLLNIIYWYIFFHYKPL 202
           ILF+L  I+YW I    K +
Sbjct: 372 ILFMLFIILYWPILLFKKAM 391


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 355 CPTLLTETHCCVTAEIGRVAIPTSQDVLPPVNIISS 248
           C T+   T   V + +  V I   + V+PPV + +S
Sbjct: 209 CRTMHRLTRQVVVSSVANVRIADHRGVMPPVILENS 244


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 355 CPTLLTETHCCVTAEIGRVAIPTSQDVLPPVNIISS 248
           C T+   T   V + +  V I   + V+PPV + +S
Sbjct: 209 CRTMHRLTRQVVVSSVANVRIADHRGVMPPVILENS 244


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 74  RNSFSGWTSKTYNV 33
           ++SF+GWT+  Y +
Sbjct: 501 KDSFAGWTAPIYTL 514


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 74  RNSFSGWTSKTYNV 33
           ++SF+GWT+  Y +
Sbjct: 501 KDSFAGWTAPIYTL 514


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 74  RNSFSGWTSKTYNV 33
           ++SF+GWT+  Y +
Sbjct: 501 KDSFAGWTAPIYTL 514


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 261 ILFLLLNIIYW 229
           + F++ NI+YW
Sbjct: 454 VAFIIFNILYW 464


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 261 ILFLLLNIIYWYIF 220
           + F+L N IYW  +
Sbjct: 474 VSFMLFNAIYWIFY 487


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +3

Query: 204 MAYNEKIYTSK*YLEEEIIFTGGRTSCEVGIATL 305
           M Y+   Y  + +++  + F GG+ +  + I+ L
Sbjct: 49  MTYSMDCYFRQSWVDRRLAFQGGKETLALSISML 82


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 452 VERELIHPSKQ*KYTYNNLFRKKHGYSI 535
           +  + IH +   KY YNN  +K + Y+I
Sbjct: 85  LSNKTIHNNNNYKYNYNNNCKKLY-YNI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,912
Number of Sequences: 438
Number of extensions: 4053
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)