Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2340
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0092 - 22759791-22760676,22761446-22761813,22762202-227622...    28   6.3  
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256...    28   6.3  

>04_04_0092 -
           22759791-22760676,22761446-22761813,22762202-22762207,
           22763365-22763603,22764808-22765339
          Length = 676

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 266 DVYQWSPVVTSGHRHSRIPNTQVTF 192
           D + W+P++ S HR   I +T+ TF
Sbjct: 138 DCHVWTPLIASSHRDGSIYDTRGTF 162


>04_04_0089 -
           22724971-22725035,22725403-22725466,22725602-22725688,
           22726775-22726789,22736269-22736685,22738235-22738473,
           22739673-22740223,22740440-22740540
          Length = 512

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 266 DVYQWSPVVTSGHRHSRIPNTQVTF 192
           D + W+P++ S HR   I +T+ TF
Sbjct: 178 DCHVWTPLIASSHRDGSIYDTRGTF 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,702
Number of Sequences: 37544
Number of extensions: 236767
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)