Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2340
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-11|CAH19081.1|  484|Caenorhabditis elegans Hypothetical p...    28   4.2  
Z72502-10|CAA96587.1|  447|Caenorhabditis elegans Hypothetical p...    28   4.2  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    28   4.2  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    28   5.6  
Z81047-8|CAB02830.2|  323|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine re...    27   9.8  
AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z72502-11|CAH19081.1|  484|Caenorhabditis elegans Hypothetical
           protein C08B6.4b protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 356 LSHHNLKLAYFTPTLAAGIASLMYIISPQK*K-MFE*LELGNINTGGKN 499
           L   NL +    P LA  +ASL + ++PQ  K     + +GN N+G KN
Sbjct: 291 LKEPNLVMTKMDPPLAV-LASLWFYMTPQPPKPAMHDIVMGNWNSGAKN 338


>Z72502-10|CAA96587.1|  447|Caenorhabditis elegans Hypothetical
           protein C08B6.4a protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 356 LSHHNLKLAYFTPTLAAGIASLMYIISPQK*K-MFE*LELGNINTGGKN 499
           L   NL +    P LA  +ASL + ++PQ  K     + +GN N+G KN
Sbjct: 254 LKEPNLVMTKMDPPLAV-LASLWFYMTPQPPKPAMHDIVMGNWNSGAKN 301


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 356 LSHHNLKLAYFTPTLAAGIASLMYIISPQK*K-MFE*LELGNINTGGKN 499
           L   NL +    P LA  +ASL + ++PQ  K     + +GN N+G KN
Sbjct: 217 LKEPNLVMTKMDPPLAV-LASLWFYMTPQPPKPAMHDIVMGNWNSGAKN 264


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 533 KYRSKNGKDKMYFYPQYLYYPI 468
           ++R   G DK Y+Y Q +Y PI
Sbjct: 14  RFRCPGGGDKEYYYTQMMYKPI 35


>Z81047-8|CAB02830.2|  323|Caenorhabditis elegans Hypothetical
           protein C41G6.10 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -2

Query: 554 LVICLIRKYRSKNGKDKMYFYPQYLYYPILVIQTFFIFVGILCTLKMQFQLQVSE*NMLI 375
           L+IC +RK+++          P ++Y+ +L +  F I+  +  TL M  +    +  ML 
Sbjct: 110 LIICFLRKHKAIMNLRSTSSVPNWIYHVLLGMIVFLIW-SLTFTLSMSSESYEKQLEML- 167

Query: 374 SNCDDLTHP 348
               D+ HP
Sbjct: 168 ----DIFHP 172


>AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein63 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 560 KKLVICLIRKYRSKNGKDKMYFYPQYLYYPILVIQTFFIFVGIL 429
           + +V C +RK+++     K Y  P +L + I    TF I + ++
Sbjct: 106 ESMVFCFVRKHQTIAKTLKKYVMPSWLVWGIFAFFTFGICLTVI 149


>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = -2

Query: 554 LVICLIRKYRSKNGKDKMYFYPQYL------YYPILVIQTFFIFVGILCTLKMQFQLQVS 393
           ++IC + K+++  G  K +  P+YL      Y+P   +    I+  +     ++F+   +
Sbjct: 125 MIICFVHKHQTIAGTLKKFNIPKYLLILMFAYFPAYTVSVASIYSRLSVPESLKFEFVAT 184

Query: 392 E*NMLISNCDDLTHPNAYKLNENYKFQISF 303
               L+     L + + Y  + ++K  I +
Sbjct: 185 TYPDLLPEFKSLPNFSIYDFSVHFKIFIIY 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,966
Number of Sequences: 27780
Number of extensions: 249446
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)