Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2339
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 199 2e-52
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 128 4e-31
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 116 3e-27
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 111 5e-26
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 107 1e-24
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 91 8e-20
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 84 2e-17
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 69 7e-13
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 50 2e-07
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 3.5
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 3.5
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 6.1
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 6.1
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 8.1
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 199 bits (486), Expect = 2e-52
Identities = 107/186 (57%), Positives = 130/186 (69%)
Frame = +2
Query: 23 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 202
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 203 VTNDGATILKSIGVDNPAAKILLDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 382
VTNDGATILKSI +DN AAK+L+++SKVQD+EVGDGTTSV V ++ K+H
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118
Query: 383 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFT 562
PQ II G+RIA+ A AL +S D+ + A R DLENIARTTLSSKILS +K HF
Sbjct: 119 PQVIIDGYRIATKTAIDALRASSIDNSS--DPAKFRSDLENIARTTLSSKILSQNKNHFA 176
Query: 563 KLAVDA 580
+LAVDA
Sbjct: 177 QLAVDA 182
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 128 bits (310), Expect = 4e-31
Identities = 68/165 (41%), Positives = 106/165 (64%)
Frame = +2
Query: 86 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 265
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 266 LLDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 445
L+++++ QD+EVGDGTTSV + +L++ K+HP TII G+R+A A + + +
Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTD 139
Query: 446 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDA 580
+L + S L N+A+T++SSKI+ N + F+ +AVDA
Sbjct: 140 VLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDA 180
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 116 bits (279), Expect = 3e-27
Identities = 64/182 (35%), Positives = 101/182 (55%)
Frame = +2
Query: 35 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 214
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 215 GATILKSIGVDNPAAKILLDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 394
GATI+K + + +PAAK L+D+++ QD EVGDGTTSV V +E + I
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 395 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAV 574
I G+R A+ A + E + H +E LR L A T ++SK++ ++ FTK+ V
Sbjct: 126 IRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184
Query: 575 DA 580
DA
Sbjct: 185 DA 186
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 111 bits (268), Expect = 5e-26
Identities = 63/165 (38%), Positives = 100/165 (60%)
Frame = +2
Query: 86 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 265
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 266 LLDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 445
L+D+S QD E GDGTTSV + KL+++ +HP I ++ A+ + E
Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKE 137
Query: 446 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDA 580
+ + + E+ LR A T+L+SKI+S + +AVDA
Sbjct: 138 NALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIAVDA 177
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 107 bits (257), Expect = 1e-24
Identities = 62/163 (38%), Positives = 96/163 (58%)
Frame = +2
Query: 92 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILL 271
S + + ++V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+L+
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 272 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 451
+SK QD+E+GDGTT V V LI++ +HP I G+ A A + L +A
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAI 153
Query: 452 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDA 580
D E + +L A+T+L SK++S +HF +AVDA
Sbjct: 154 SDVVDFSPENT--TNLFRSAKTSLGSKVVSKAHDHFANIAVDA 194
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 91.5 bits (217), Expect = 8e-20
Identities = 53/183 (28%), Positives = 100/183 (54%)
Frame = +2
Query: 32 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 211
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 212 DGATILKSIGVDNPAAKILLDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 391
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 392 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLA 571
+I ++ A + A + E + N+++ ++ + RT + +K+++ + LA
Sbjct: 120 MIRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVARWSDLMCHLA 174
Query: 572 VDA 580
+ A
Sbjct: 175 LRA 177
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 83.8 bits (198), Expect = 2e-17
Identities = 53/158 (33%), Positives = 78/158 (49%)
Frame = +2
Query: 107 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILLDMSKV 286
AI + D++KS LGP G K+LV +G +++T DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 287 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 466
QD+ GDGTTSV + I + LHP I G+ +A + A L D +
Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141
Query: 467 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDA 580
+ R L N+A+T+LS+KI S E VDA
Sbjct: 142 D------REVLLNVAKTSLSTKISSKVVESLAPAVVDA 173
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 68.5 bits (160), Expect = 7e-13
Identities = 42/143 (29%), Positives = 71/143 (49%)
Frame = +2
Query: 116 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILLDMSKVQDE 295
+ ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK+++D ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 296 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 475
E+GD V V +I L P I G+ +A + L E D +
Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151
Query: 476 EASLRVDLENIARTTLSSKILSN 544
+L RT +SSK N
Sbjct: 152 TVESEKELIKAIRTCISSKQYGN 174
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 50.4 bits (115), Expect = 2e-07
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = +2
Query: 86 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 253
R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 254 AAKILLDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 421
A+++ D++ +E GDGTT+ TV + + +P + G ++A D
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVD 156
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +2
Query: 119 GDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILLDMSKVQDEE 298
G++ +T + ++ + S S +TN +++ S+ + A + LLD S +D
Sbjct: 190 GNVTGTTFSSQAPEERIASPISTSSPESLTNQSSSLQSSLQTSSMAPRNLLDQSTEKDIV 249
Query: 299 VG 304
VG
Sbjct: 250 VG 251
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +2
Query: 110 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILLDMSKVQ 289
IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379
Query: 290 DEEVGD 307
++ D
Sbjct: 380 PDDAND 385
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 116 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 238
+G++ LGP I+ +CG ++ V+ A + + I
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 240 PIDFNIVAPSFVTST*PEFLPQETKILSIP 151
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 187 VPPAGN*DLIHSFGT*STLYQISYGNSTD 101
V P + L+H +G T YQ YG + D
Sbjct: 308 VVPGTSVPLVHDYGASGTGYQAGYGMALD 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,398
Number of Sequences: 5004
Number of extensions: 37364
Number of successful extensions: 113
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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