Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2337
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q84HE0 Cluster: Flippase; n=1; Vibrio vulnificus|Rep: F...    33   8.0  
UniRef50_Q7RB04 Cluster: Putative uncharacterized protein PY0634...    33   8.0  

>UniRef50_Q84HE0 Cluster: Flippase; n=1; Vibrio vulnificus|Rep:
           Flippase - Vibrio vulnificus
          Length = 416

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 189 PMVYNNRSFDETNLFFRIIWCSLRMIT 109
           P++ N  SFDET L F I+WC + +++
Sbjct: 166 PVIVNFFSFDETILVFAIVWCVISILS 192


>UniRef50_Q7RB04 Cluster: Putative uncharacterized protein PY06345;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY06345 - Plasmodium yoelii yoelii
          Length = 961

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 164 KLLLLYTIGVLNGI*VIYIEGLMCVY--LTFLRKNGSYINFKSVILK*MFNSLILQNK*F 337
           ++++ +TI  LN I   +IE   CVY  ++ L  N SY N    ILK +F ++IL+ K F
Sbjct: 206 EVVIFFTIVCLNFIKEAFIEIAKCVYYIISLLFSNISYKN----ILKKIFINIILEKKIF 261

Query: 338 TN 343
            N
Sbjct: 262 IN 263


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,365,612
Number of Sequences: 1657284
Number of extensions: 10244791
Number of successful extensions: 21234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21227
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)