Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2337
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.0  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    28   1.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.7  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    25   9.7  

>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 272 CNCHFFLKMLSKRTLVLLYKLL-IFHSIHLWCIIIEALTKQIYSL 141
           C+  FF ++L +  L+ L K + +    H W +IIE L    Y +
Sbjct: 298 CSPAFFFQLLIQPFLINLEKRIPLLRKYHYWVLIIEMLINGTYGM 342


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 88  INKLNTFGYHSQAAPNDSKE*ICFVKASIIIHHRCIEW 201
           +N  N + Y     P DS   I +  AS+ I+HR  EW
Sbjct: 737 LNLANCYNYDMAVFP-DSAHSISYHNASLSIYHRLSEW 773


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 508 YEQ*YNSLHFTQYKH*H 458
           YE  YN LH ++Y H H
Sbjct: 366 YENRYNKLHASEYNHHH 382


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 351  NSLFVNYLFCRINEL 307
            ++LF NYL C INEL
Sbjct: 1011 STLFANYLDCLINEL 1025


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 324 KINNLQIMNSLVYENDDNIE---LYINQFENKVN 416
           K  +L +MNS++ E+D+N       + + EN +N
Sbjct: 3   KSADLDLMNSIISESDENFSPPPFTVEEAENSIN 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,711
Number of Sequences: 5004
Number of extensions: 48896
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)