Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2335
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    50   3e-07
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   3.8  
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.1  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   5.1  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   6.7  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   8.8  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 35/147 (23%), Positives = 64/147 (43%)
 Frame = +1

Query: 10   LFEHLTLLLTRGFQXXXXXXXXXXXXXXXKGTFEPGDINANLHYILDVCVNDLFGALSEE 189
            +   L   L RG+Q               +  +  G I+  +  +  + V+++FG +  E
Sbjct: 1693 IISQLQTSLKRGYQLHVLGYTVHYLLLAIEDVYPYGSIDYCMDSLAQIFVDEIFGEVGVE 1752

Query: 190  KEVDKLHYKTPEAKPSKKSYVTLAIVSENITERCLINLLLPFKEVLEKHHSKKIVSKVQE 369
            K+ +       E K   KSY +  IV+   +   L  LL P K VL + +  K + KV E
Sbjct: 1753 KDSEDYKSNVKEIK-GNKSYDSYEIVARISSFDSLSTLLRPVKNVLFETNVPKSLRKVDE 1811

Query: 370  ALMHITSGLVSNRFIDIESLFVFLHGI 450
                ++ G+V+N+    +S  +F + +
Sbjct: 1812 LCRRLSLGIVANKQSASQSSLIFCYNV 1838


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +1

Query: 205 LHYKTPEAKPSKKSYVTLAIVSENITERCLINLLLPFKEVLEKHHSKKIVS 357
           ++ K+ EA  + + + T ++V  + T +  +  L  F+E+ EK+H + ++S
Sbjct: 848 IYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV--LREFQEIAEKYHHQNLLS 896


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 238 KKSYVTLAIVSENITERCLINLLLPFKEVLE--KHHSKKIVSK 360
           +K+ V +  ++ ++TE  L N  +PF E++    H  +K V +
Sbjct: 4   RKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDR 46


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 557 GTIKQSGFALSIFSLCCSVISL 492
           G  +Q+GF LS+ S C SV++L
Sbjct: 547 GFTRQTGFDLSVASECMSVLAL 568


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
 Frame = +1

Query: 295 INLLLPFKEVLEKHHSKKI-----VSKVQEALMHITSGLVSNRFIDIESLFVFLHGIASD 459
           I++L   KE  E HH  +I     V+    +  +IT   + ++ ID+         +  +
Sbjct: 280 ISILRGLKERYEVHHGVRITDDALVTAATYSARYITDRFLPDKAIDLVDEACSSLRLQQE 339

Query: 460 SIPQFVLGAPKREITEQQREKMLRAKPDCFIVPEAPK-RNKETQAKERQ 603
           S P  +    ++ +T Q   + LR + D   V    K  +K T  KE Q
Sbjct: 340 SKPDELRRLDRQIMTIQIELESLRKETDTTSVERREKLESKLTDLKEEQ 388


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 26/108 (24%), Positives = 47/108 (43%)
 Frame = -2

Query: 536 FALSIFSLCCSVISLFGAPNTN*GMLSEAIPCKNTNNDSISMNLFDTRPLVMCINASCTF 357
           F+L +     S+I + G P T  G+L +  P     +D ++  +   RP ++C +   TF
Sbjct: 62  FSLGLRKEWTSIIWIAG-PLT--GILIQ--PIAGILSDRVNSRIGRRRPFMLCASLLGTF 116

Query: 356 ETIFFEWCFSRTSLNGSNRLIRQRSVMFSETIASVT*LFLLGFASGVL 213
                 W         SN ++ +R  +   TI+    ++LL  A  V+
Sbjct: 117 SLFLMGWAPDICLFIFSNEVLMKRVTIVLATIS----IYLLDVAVNVV 160


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 ANLHYILDVCVNDLFGALSEEKEV 198
           AN+HYILD    D+   L + +E+
Sbjct: 228 ANVHYILDAFSGDVLSRLEDFQEL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,763
Number of Sequences: 5004
Number of extensions: 37536
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)