Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2335
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 68 7e-12
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328... 30 1.7
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 29 3.0
03_06_0425 - 33847906-33848892 29 3.9
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 28 6.9
09_02_0472 + 9657354-9658346 27 9.1
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220... 27 9.1
07_03_0416 - 17962740-17963009,17963076-17963732 27 9.1
07_03_0201 - 15036103-15037329 27 9.1
07_01_1098 - 10083800-10084447,10084523-10084792 27 9.1
07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041 27 9.1
04_04_0874 - 28988687-28989736 27 9.1
02_05_0205 + 26755024-26756217 27 9.1
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 67.7 bits (158), Expect = 7e-12
Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Frame = +1
Query: 118 DINANLHYILD----VCVNDLFGALSEEKEVDKLHYKTPEAKPSKKSYVTLAIVSENITE 285
D+N L+Y L+ V +D+ G ++E+KEV+K+ K E K + S TL ++S+ +T
Sbjct: 1570 DMNGRLNYCLEDLLAVVESDILGDVAEQKEVEKIASKMKETK-KRMSLETLKLISQCVTF 1628
Query: 286 RC-LINLLLPFKEVLEKHHSKKIVSKVQEALMHITSGLVSNRFIDIESLFVFLHGIASDS 462
+ + L+ P L+KH + K+ SK++ L +I G+ N + LFVF++G+ D+
Sbjct: 1629 KTHSLKLISPISSHLQKHLTPKLKSKLEMMLHNIALGIECNPSTETFDLFVFVYGLIKDT 1688
Query: 463 I 465
I
Sbjct: 1689 I 1689
>02_05_0785 -
31730300-31730701,31730785-31730856,31730940-31732864,
31733000-31733150,31733944-31734009,31734247-31734645
Length = 1004
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Frame = +1
Query: 109 EPGDINANLHYILDVCVNDLFGALSEEKE----VDKLHYKTPEAKPSKKSYVTLAIVSEN 276
E G+ N N + C DL SE + + Y P +P+ K LAI+ ++
Sbjct: 193 EVGETNGNHDGKKENCGKDLGEGKSEASRALHRICSMVYSNPSRRPTGK---VLAIIKKS 249
Query: 277 ITERCLINLLLPFKEVLEKHHSKKIVSKVQEALMHITSGLVSNRFIDIESLFVFLHGIAS 456
++ L PF + K +S + + + H S S + + + F H + +
Sbjct: 250 PRRDTVVGFLAPFAVCPDPEQQKNQMSMLSKRMNHRASSYFSGLILLLPTDSKFPHMVVN 309
Query: 457 DS 462
S
Sbjct: 310 VS 311
>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 283 ERCLINLLLPFKEVLEKHHSKKIVSKVQEALMHITSGLVSN 405
E+C + LLL + +H S +S ++ L+ I LVS+
Sbjct: 1041 EKCQLELLLDLEASSSRHPSDASISSAEDGLLRIPLNLVSS 1081
>03_06_0425 - 33847906-33848892
Length = 328
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 173 PNKSLTQTSRM*WRLAFMSPGSKVPFRA-SSTACTVATNTCTWNPLVSNKVR 21
P+ L ++ + WR+ + PFR S++ CTV C +NP+V+ R
Sbjct: 6 PSSDLALSTELSWRVLSFAHH---PFREESNSVCTVQDIPCCYNPIVTRLSR 54
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 304 LLPFKEVLEKHHSKKIVSKVQEALMHITSGLVSNRFIDIESLFVFLH 444
L+PF+E L+ H + V K+ E +M +G N ++ ++ LH
Sbjct: 627 LVPFEECLQLHSTDSSVIKIPEYIMVTNNGRTFNIVVNPVNISSGLH 673
>09_02_0472 + 9657354-9658346
Length = 330
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 101 PFRA-SSTACTVATNTCTWNPLVSNKVR 21
PFR S++ CTV C +NP+V+ R
Sbjct: 29 PFREESNSVCTVQDTPCCYNPMVTRLSR 56
>08_01_0272 +
2200061-2200078,2200835-2202076,2202201-2202698,
2203316-2203345
Length = 595
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 349 IVSKVQEALMHITSGLVSNRFIDIESLFVFLHGIASDSIPQFVLG 483
+VS + + + SG+ ++ S+F++L +++DS+ FVLG
Sbjct: 18 LVSFSLQVFLLLLSGIRKRTTSNVLSIFIWLAYVSADSLAIFVLG 62
>07_03_0416 - 17962740-17963009,17963076-17963732
Length = 308
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 101 PFRA-SSTACTVATNTCTWNPLVSNKVR 21
PFR S++ CTV C +NP+V+ R
Sbjct: 29 PFREESNSVCTVQDTPCCYNPMVTRLSR 56
>07_03_0201 - 15036103-15037329
Length = 408
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 101 PFRA-SSTACTVATNTCTWNPLVSNKVR 21
PFR S++ CTV C +NP+V+ R
Sbjct: 107 PFREESNSVCTVQDTPCCYNPMVTRLSR 134
>07_01_1098 - 10083800-10084447,10084523-10084792
Length = 305
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 101 PFRA-SSTACTVATNTCTWNPLVSNKVR 21
PFR S++ CTV C +NP+V+ R
Sbjct: 29 PFREESNSVCTVQDTPCCYNPMVTRLSR 56
>07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041
Length = 86
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -2
Query: 107 KVPFRASSTACTVATNTCTWNPLVSNKVRCS 15
K+ R S+T T+ T+ C++N + ++C+
Sbjct: 14 KISERTSNTKATMGTSCCSYNTCEDSTIKCT 44
>04_04_0874 - 28988687-28989736
Length = 349
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 101 PFRA-SSTACTVATNTCTWNPLVSNKVR 21
PFR S++ CTV C +NP+V+ R
Sbjct: 107 PFREESNSVCTVQDTPCCYNPMVTRLSR 134
>02_05_0205 + 26755024-26756217
Length = 397
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 101 PFRA-SSTACTVATNTCTWNPLVSNKVR 21
PFR S++ CTV C +NP+V+ R
Sbjct: 96 PFREESNSVCTVQDTPCCYNPIVTRLSR 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,323
Number of Sequences: 37544
Number of extensions: 235285
Number of successful extensions: 614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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