Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2335
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF016654-3|AAB66030.1|  348|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -2

Query: 131 LAFMSPGSKVPFR---ASSTACTVATNTCTWNPLVSNKVRC 18
           +A++ P S++P     A S +C  +   CT+NPL++N V C
Sbjct: 800 VAYVDPNSQMPINCNEALSNSCP-SGYACTFNPLINNHVCC 839


>Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical
           protein C34C6.2 protein.
          Length = 821

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 431 NNDSISMNLFDTRPLVMCINASCTFETIFFEWCFSRTSLNGSNRLIRQRSVMFSETIAS 255
           NND +S   F +   V  + ++ T E I    C S  SL G N+   +  ++  ET+ +
Sbjct: 709 NNDGVSDVSFISHHFVFTLLSAITTEVISIYICVSMISLTGLNKHHLRIGIIDDETVCT 767


>Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical
           protein F35B12.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 443 CKNTNNDSISMNLFDTRPLVMCINASCTFETIFFEWCFSRTSLNGSNRLIRQRSVMFSET 264
           CK+ +N S ++N       V+ I  +  F  I+F +  +  S  G  R +++  V+F +T
Sbjct: 178 CKDDDNSS-NINTSAIFQTVLVILNAAIFAKIYFFYKSTDLSTKGRKRKLKKNKVLFLQT 236

Query: 263 I 261
           +
Sbjct: 237 M 237


>AF016654-3|AAB66030.1|  348|Caenorhabditis elegans Hypothetical
           protein C17A2.4 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 310 PFKEVLEKHHSKKIVSKVQEALMHIT 387
           PF++V  +H + +I+ K+ E  +H+T
Sbjct: 103 PFQKVCCRHENPEILEKIDEKYLHLT 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,266
Number of Sequences: 27780
Number of extensions: 213048
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)