Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2335
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.0  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   1.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = +1

Query: 118 DINANLHYILDVCVNDLFGAL---SEEKEVDKLHYKTPEAKPSKKSYVTLAIVSENITER 288
           D+     Y+ D+ ++D    L   SE+ E D    +  E    K       +  E     
Sbjct: 322 DLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTD 381

Query: 289 CLINLLLPFKEVLEKHHSKKIVSKVQEALMHITSGLV 399
            L+  +LP     E  HS+ + +K  + +  + SG+V
Sbjct: 382 RLLYSVLPISVANELRHSRPVPAKKYDCVTLLFSGIV 418


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = +1

Query: 118 DINANLHYILDVCVNDLFGAL---SEEKEVDKLHYKTPEAKPSKKSYVTLAIVSENITER 288
           D+     Y+ D+ ++D    L   SE+ E D    +  E    K       +  E     
Sbjct: 322 DLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTD 381

Query: 289 CLINLLLPFKEVLEKHHSKKIVSKVQEALMHITSGLV 399
            L+  +LP     E  HS+ + +K  + +  + SG+V
Sbjct: 382 RLLYSVLPISVANELRHSRPVPAKKYDCVTLLFSGIV 418


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 100 GTFEPGDINANLHYILDVCVNDLFGALSEE 189
           GT+ P  I AN HY     V+++   L EE
Sbjct: 43  GTYFPSLIGANEHYSKFFPVSEILSFLIEE 72


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 125 FMSPGSKVPFRASSTACTVATNTCTWNPLVSN 30
           F   GSKVP  A++  CT A     W   ++N
Sbjct: 285 FCPDGSKVPIDANTKPCTWAAR--PWQGYMTN 314


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 125 FMSPGSKVPFRASSTACTVATNTCTWNPLVSN 30
           F   GSKVP  A++  CT A     W   ++N
Sbjct: 285 FCPDGSKVPIDANTKPCTWAAR--PWQGYMTN 314


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 125 FMSPGSKVPFRASSTACTVATNTCTWNPLVSN 30
           F   GSKVP  A++  CT A     W   ++N
Sbjct: 285 FCPDGSKVPIDANTKPCTWAAR--PWQGYMTN 314


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -3

Query: 223 RAFYNATYPP 194
           R+FY+A+YPP
Sbjct: 20  RSFYSASYPP 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,003
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)