Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2334
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.18 
UniRef50_A0CPU4 Cluster: Chromosome undetermined scaffold_23, wh...    35   1.7  
UniRef50_Q09F58 Cluster: Heme maturase; n=4; Alveolata|Rep: Heme...    34   2.9  
UniRef50_Q6BZT9 Cluster: Similar to DEHA0A11495g Debaryomyces ha...    34   2.9  
UniRef50_Q057H2 Cluster: 5'-3' exonuclease domain of DNA polymer...    33   5.1  
UniRef50_Q54YK1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 181 AGWWYLPVRTHKRPYHQ 231
           A WWYLP RTHKR YH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0CPU4 Cluster: Chromosome undetermined scaffold_23, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_23,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 494

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 564 DNASFIFLVIKSCDSEENIIIKKNQMFLFHCHLKHNK 454
           DN+SF  ++ + C     I+ K+ +  LF CHL+H K
Sbjct: 253 DNSSFFVIIFQKCLVLIYIMHKQKEQILFKCHLQHQK 289


>UniRef50_Q09F58 Cluster: Heme maturase; n=4; Alveolata|Rep: Heme
           maturase - Tetrahymena paravorax
          Length = 514

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = -2

Query: 543 LVIKSCDSEENIIIKKNQMFLFHCHLKHNKICNRFIHILYKYMYTREYLFFFFNKLRI 370
           L+I   +++ NI I  N+  +F  + K+N+ C  + + L KY+Y   YLF   NK RI
Sbjct: 455 LIITEYNNQSNIAIN-NKSIIFEFY-KNNQYCYIYFY-LNKYIYIFIYLFVILNKNRI 509


>UniRef50_Q6BZT9 Cluster: Similar to DEHA0A11495g Debaryomyces
           hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
           DEHA0A11495g Debaryomyces hansenii - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 309

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 51  NAFLIGNR-TFVLQKSKKTYNVTIVTTAGPTLQTKTHY 161
           N ++  NR T V +K+ KTY+ T + T GP  QT  H+
Sbjct: 84  NNYINANRVTLVAKKNTKTYHKTYIATQGPLRQTAGHF 121


>UniRef50_Q057H2 Cluster: 5'-3' exonuclease domain of DNA polymerase
           I; n=2; cellular organisms|Rep: 5'-3' exonuclease domain
           of DNA polymerase I - Buchnera aphidicola subsp. Cinara
           cedri
          Length = 886

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = -2

Query: 513 NIIIKKNQMFLFHCHLKHNKICNRFIHILYKYMYTREYLFFFFNKLRIYL 364
           NI IKK++  ++   LK+NKI  RFI   YK    R Y+   F K ++Y+
Sbjct: 733 NISIKKSKNLIYRYFLKYNKI-KRFIKNTYKTAKKRGYIKTLF-KRKLYI 780


>UniRef50_Q54YK1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 192

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 564 DNASFIFLV-IKSCDSEENIIIKKNQMFLFHCHLKHN-KICNRFIHILYKYMYTREYLFF 391
           D++S IF+  + S      +   KN +F F    K   K   ++I  ++ Y YTR    F
Sbjct: 83  DSSSLIFIFSLSSIYLLLLLFFFKNILFFFFFFFKFPIKKSTKYIKKIFSYFYTRTIFLF 142

Query: 390 FFNKLRIY 367
           F+  LR+Y
Sbjct: 143 FYLLLRLY 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,086,482
Number of Sequences: 1657284
Number of extensions: 12301590
Number of successful extensions: 26979
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26960
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)