Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2334
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   2.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   4.5  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   6.0  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   7.9  

>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 492 QMFLFHCHLKHNKICNRFIHILYKYMYTREYLFFFFNKLRIYL 364
           Q FLF  +LKHN +    I     +   RE+L F+   +  +L
Sbjct: 58  QRFLFSSNLKHNYVNLNIIFTSCIFRSLREFLRFYIAAIMCFL 100


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -2

Query: 249 KYSIQLLVVGPLVSPHG 199
           K++IQL+VVGPL+  +G
Sbjct: 575 KFNIQLIVVGPLIDLYG 591


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 69  NRTFVLQKSKKTYNVTIVTTAGPTLQTKTHYCFTAEIGR 185
           N+   L+K   TY+ + +T+    LQ+ T+Y  T  IGR
Sbjct: 37  NQENQLEKRDYTYSPSGITSFPLDLQSYTYYTTTLSIGR 75


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 546 FLVIKSCDSEENIIIKKNQMFLFHC 472
           ++  K+C S + I+ K+N++F   C
Sbjct: 270 YVTCKTCKSPDTILTKENRIFFMTC 294


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -2

Query: 549 IFLVIKSCDSEENII----IKKNQMFLFHCHLKHNKICNRFIHILYKYMYTREYLFFF 388
           + +++  C SEE I+    +KK    L  C LKH  +C   I  L     + +YL ++
Sbjct: 127 VSILLAFC-SEEAILRSYEVKKRVSTLLQCCLKHYDLCIPVICTLSSNPKSAKYLLYY 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,416
Number of Sequences: 5004
Number of extensions: 54014
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)