Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2334
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormo...    29   2.4  
Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   5.6  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   5.6  

>AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 130 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -2

Query: 468 LKHNKICN-RFIHILYKYM--YTREYLFFFFNKLRIYLLS 358
           L +N +CN + I + Y +   Y +E L FFF+++  Y+L+
Sbjct: 289 LTYNSVCNPKTIELDYSWFTKYPKEQLCFFFDEMEDYMLT 328


>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
           protein K10D11.5 protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 48  INAFLIGNRTF---VLQKSKKTYNVTIVTTAGPTLQTK 152
           + A+ +GN T    V   SK TYN T  ++  PTL  K
Sbjct: 407 VEAYFVGNTTLRISVYSGSKCTYNQTYTSSNQPTLNVK 444


>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 680 SVPARSYECRGTTRARI*PNIRYVLFSNSFIEVPARLV 567
           SVP+RSYE   +      PN ++VL  N + +VP  LV
Sbjct: 729 SVPSRSYEMLKSDN----PNAKFVLIPNIYEKVPIDLV 762


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 152 NALLLYGRNRQGGGTYPCG 208
           +A L++GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 152 NALLLYGRNRQGGGTYPCG 208
           +A L++GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,277,317
Number of Sequences: 27780
Number of extensions: 311257
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)