Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2333
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical pr... 35 0.049
AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical ... 33 0.11
U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical pr... 30 1.4
U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related... 29 3.2
AF125958-1|AAD14729.1| 342|Caenorhabditis elegans Serpentine re... 29 3.2
AL032647-4|CAA21692.1| 360|Caenorhabditis elegans Hypothetical ... 28 4.3
U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z46933-6|CAA87038.3| 321|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z46829-2|CAA86863.3| 321|Caenorhabditis elegans Hypothetical pr... 27 7.5
AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical ... 27 7.5
Z92785-3|CAB07202.1| 326|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF099924-2|AAC68811.1| 189|Caenorhabditis elegans Hypothetical ... 27 9.9
>U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical
protein ZK180.3a protein.
Length = 522
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Frame = -2
Query: 551 QLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKYKDTEY 372
Q+ ++ + + S+ L+++Y L GFI++N INM RI+++ IR D
Sbjct: 387 QIFTHGKFLFVTSIIHLIINYVLCVYMNSAGFIVANIINMSVRIIYNWRTIREYLGDKCP 446
Query: 371 KPLNGLLVGK--IFLS-TLFIAGFVCKISEIRLFPSFILLHILVGGIMLL 231
L G+ IFL +L F + S+ L HI +G + L+
Sbjct: 447 SFTEVLPTGQTSIFLGVSLLATSFTYLLFATTPGLSYTLAHIAIGAVCLI 496
>U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical
protein ZK180.3b protein.
Length = 285
Score = 34.7 bits (76), Expect = 0.049
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -2
Query: 551 QLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMH 414
Q+ ++ + + S+ L+++Y L GFI++N INM RI++
Sbjct: 239 QIFTHGKFLFVTSIIHLIINYVLCVYMNSAGFIVANIINMSVRIIY 284
>AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical
protein VF36H2L.1 protein.
Length = 308
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -2
Query: 554 SQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCIN 435
S LNS + +++F+V FL+L C+ Y +G IS+ +N
Sbjct: 221 SSLNSRGFHVLVFAVQFLILLICIAYCNVIMGGTISSFVN 260
>U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical
protein C30G12.4 protein.
Length = 258
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 349 LAKYFYQHCSLLVLYVKYLKFACSLLLYYSTY 254
L + ++ CSL Y Y+ +C LLLYY T+
Sbjct: 93 LNSHSFECCSLTFSY-SYMMVSCKLLLYYGTF 123
>U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related
family protein 10 protein.
Length = 900
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 334 YQHCSLLVLYVKYLKFACSLLLYYS 260
Y C+LL+ + L F C++L+YY+
Sbjct: 409 YTMCALLLTFAYQLTFFCAILVYYT 433
>AF125958-1|AAD14729.1| 342|Caenorhabditis elegans Serpentine
receptor, class j protein9 protein.
Length = 342
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -2
Query: 554 SQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIG 459
SQ+ Y YL++IF++ F +L Y ++ I PIG
Sbjct: 36 SQMGKYKYLLIIFAI-FDIL-YSISEILTPIG 65
>AL032647-4|CAA21692.1| 360|Caenorhabditis elegans Hypothetical
protein Y57A10B.5 protein.
Length = 360
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = -2
Query: 356 LLVGKIFLS------TLFIAGFVCKISE--IRLFPSFILLHILVGGIMLLCVLIAWGYE 204
+LVG + +S T + GF ++ + + + ILL LV + LLC +AW +E
Sbjct: 259 VLVGSVHISLTLLVFTCLMLGFFERLQVFFVHILENLILLPALVMAVALLCCSVAWRHE 317
>U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical
protein C28H8.8 protein.
Length = 297
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 519 FLCKFLSFVILFDIYFWSYRIHNFKLY 439
F+ FL F +LF +++ Y++H Y
Sbjct: 2 FIILFLCFTVLFMLFYPDYKVHQLSSY 28
>Z46933-6|CAA87038.3| 321|Caenorhabditis elegans Hypothetical
protein T14B1.2 protein.
Length = 321
Score = 27.5 bits (58), Expect = 7.5
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Frame = -2
Query: 560 LSSQLNSYNYLMV-IFSVSFLVLSYCLTYIFGPIGFIISNCIN-MFARIMHSIHFIRNKY 387
L LN Y YL+ IF V ++ S+ L+ + I +++ +++ + F+ +
Sbjct: 162 LGVSLNPYVYLLSPIFYVVMILTSFSLSALIYCIAHNLTHMEERQRSKLFRRLFFL---F 218
Query: 386 KDTEYKPLNGLLVGKIFLSTLFIAGFVCKISEIRLFPSFILLHILVGGIMLLCVLIAW 213
T + L ++L ++F G C+I+ + + +L+ GIM+ V+ W
Sbjct: 219 SSTLWTFFTCLPYRLLYLFSIF-CGETCQINNYYKTATNLFFRLLIVGIMINPVITIW 275
>Z46829-2|CAA86863.3| 321|Caenorhabditis elegans Hypothetical
protein T14B1.2 protein.
Length = 321
Score = 27.5 bits (58), Expect = 7.5
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Frame = -2
Query: 560 LSSQLNSYNYLMV-IFSVSFLVLSYCLTYIFGPIGFIISNCIN-MFARIMHSIHFIRNKY 387
L LN Y YL+ IF V ++ S+ L+ + I +++ +++ + F+ +
Sbjct: 162 LGVSLNPYVYLLSPIFYVVMILTSFSLSALIYCIAHNLTHMEERQRSKLFRRLFFL---F 218
Query: 386 KDTEYKPLNGLLVGKIFLSTLFIAGFVCKISEIRLFPSFILLHILVGGIMLLCVLIAW 213
T + L ++L ++F G C+I+ + + +L+ GIM+ V+ W
Sbjct: 219 SSTLWTFFTCLPYRLLYLFSIF-CGETCQINNYYKTATNLFFRLLIVGIMINPVITIW 275
>AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical
protein Y51H7C.10 protein.
Length = 237
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -2
Query: 455 IISNCINMFARIMHS-IHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGF-VCKISEI 288
+I+ CI F ++ + I+F+ N++K+T K G G+I L L + G C ++ +
Sbjct: 157 VIAACILTFVLLVGTVIYFLTNRWKETRMKMDLGAPPGRI-LDPLSVQGLATCHVNNV 213
>Z92785-3|CAB07202.1| 326|Caenorhabditis elegans Hypothetical
protein F31E9.5 protein.
Length = 326
Score = 27.1 bits (57), Expect = 9.9
Identities = 28/95 (29%), Positives = 44/95 (46%)
Frame = -2
Query: 503 LVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTL 324
++L Y + YI I+S + + IM S+ + N E P N IFL T
Sbjct: 188 ILLIYSILYIVINSCVILSGVL--YIPIMISVRKLSNLASAQENTPQN-----YIFLQT- 239
Query: 323 FIAGFVCKISEIRLFPSFILLHILVGGIMLLCVLI 219
IA V K I LFP +L + +++LC+++
Sbjct: 240 -IAVIVFKF--IGLFPVILLAYEFTKEVVMLCIVL 271
>AF099924-2|AAC68811.1| 189|Caenorhabditis elegans Hypothetical
protein K07A9.3 protein.
Length = 189
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 19 HGYFLLLSGGVLININIYIKFLSVHP*IY 105
HG +++ +L N+N Y+ FL++ P ++
Sbjct: 64 HGKIVVVDRKLLYNVNNYLGFLNIQPMVF 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,549
Number of Sequences: 27780
Number of extensions: 272359
Number of successful extensions: 774
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -