Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2333
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   3.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 357 LACWQNIFINIVHCW 313
           L+CW NI+  I+  W
Sbjct: 107 LSCWTNIYYIIILAW 121



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 375 FRIFIFVPYKMNTVHYP 425
           F I  FVP K  T  YP
Sbjct: 509 FNIIKFVPVKYLTYEYP 525


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 357 LACWQNIFINIVHCW 313
           L+CW NI+  I+  W
Sbjct: 160 LSCWTNIYYIIILAW 174



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 375 FRIFIFVPYKMNTVHYP 425
           F I  FVP K  T  YP
Sbjct: 562 FNIIKFVPVKYLTYEYP 578


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 212 GYENRELVVKMHRKIMN 162
           G  N ELV +MH K+ N
Sbjct: 352 GLRNTELVERMHNKLRN 368


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 4/15 (26%), Positives = 10/15 (66%)
 Frame = -1

Query: 357 LACWQNIFINIVHCW 313
           ++CW N++  ++  W
Sbjct: 69  MSCWMNVYYIVILAW 83


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 347 GKIFLSTLFIAGFVCKISEIRLF 279
           GKI LS  +I   VC + +  +F
Sbjct: 153 GKIMLSFAWIGSVVCSLPQTIVF 175


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 344 KIFLSTLFIAGFVCKISEIRLFPSFILLHI 255
           K+F++ +FI  +V  +  I LF S +L  I
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILFYSRLLSSI 247


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 293 EIRLFPSFILLHILVGGIMLLCVLIAWGYENRELVVKMHRKIMNKEEKLS 144
           +IRL P+F    +LVG  + +    A    N +  + M+     K+E+L+
Sbjct: 49  DIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDYTITMYLNQYWKDERLA 98


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 344 KIFLSTLFIAGFVCKISEIRLFPSFILLHI 255
           K+F++ +FI  +V  +  I LF S +L  I
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILFYSRLLSSI 247


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 530 LMVIFSVSFLVLSYCLTYIFGPIGF 456
           ++ I + SFL+LS   TY+    G+
Sbjct: 4   MLEIAARSFLLLSIASTYVVSVAGY 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,495
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)