Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2332
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003383-2|AAB54235.2| 344|Caenorhabditis elegans Hypothetical ... 30 1.3
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL110484-10|CAB54401.1| 237|Caenorhabditis elegans Hypothetical... 29 2.3
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 2.3
AF067947-4|AAC19230.1| 300|Caenorhabditis elegans Hypothetical ... 29 2.3
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 5.4
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 5.4
AF024503-16|AAG24086.2| 287|Caenorhabditis elegans Serpentine r... 28 7.1
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 27 9.4
>AF003383-2|AAB54235.2| 344|Caenorhabditis elegans Hypothetical
protein ZC250.3 protein.
Length = 344
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 299 GTFK*WNFVIFGLNKTNFY-GLIINIFIMYRARTIEVYLGDIGI 427
G F+ W+FV+ L TN G++I++ I Y ++ Y + I
Sbjct: 237 GAFRGWDFVVVCLTVTNSVGGILISVVIKYADNILKAYAQSMAI 280
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical protein
M79.1c protein.
Length = 1209
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 445 SGLQGVPERMDNPKTPHSRANGDTK 519
S L GV E P+ P R+NGDTK
Sbjct: 980 SSLSGVYEERMKPELPRKRSNGDTK 1004
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical protein
M79.1b protein.
Length = 1214
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 445 SGLQGVPERMDNPKTPHSRANGDTK 519
S L GV E P+ P R+NGDTK
Sbjct: 985 SSLSGVYEERMKPELPRKRSNGDTK 1009
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical protein
M79.1a protein.
Length = 1224
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 445 SGLQGVPERMDNPKTPHSRANGDTK 519
S L GV E P+ P R+NGDTK
Sbjct: 995 SSLSGVYEERMKPELPRKRSNGDTK 1019
>AL110484-10|CAB54401.1| 237|Caenorhabditis elegans Hypothetical
protein Y38E10A.10 protein.
Length = 237
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 410 LGDIGIYFSNYRLVYRVSQKEWIILKHPIVGLMGTQKINKKYFLGSHWWGDHSSY 574
+GDIG Y + + K IIL H + + + YF+ SH W + Y
Sbjct: 44 IGDIGSYGGGSHVGNSATSKRPIILVHGATNTAASFALQRDYFM-SHGWSAETVY 97
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 314 WNFVIFGLNKTNFYGLIINIFIMYRARTIEVYLGDIGIY 430
W VI+ L + YG + F+++ + +E +L D+GIY
Sbjct: 116 WYIVIYTLVGSLVYGWNVLRFVLWTDQKLEGFLDDMGIY 154
>AF067947-4|AAC19230.1| 300|Caenorhabditis elegans Hypothetical
protein T10B5.7 protein.
Length = 300
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 377 IMYRARTIEVYLGDIGIYFS-NYRLVYRVSQKE-WIILKHPIVG 502
IMYR +T G++G YF+ +Y L++ KE + LKH G
Sbjct: 114 IMYRNKTAWFGGGNVGFYFARSYNLLWNAGMKEDFNTLKHAYPG 157
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 319 IPLLKCPLTQ*DSVGAIIMELLK*IDIMRWSEQIQTSSRPRTTVTTH 179
+PLL DSVGAI M +L ++ W+++ + T+ + H
Sbjct: 747 VPLLSGLTLDVDSVGAISMRVLASAEVSLWNQRSNAKAEAYTSGSLH 793
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 319 IPLLKCPLTQ*DSVGAIIMELLK*IDIMRWSEQIQTSSRPRTTVTTH 179
+PLL DSVGAI M +L ++ W+++ + T+ + H
Sbjct: 747 VPLLSGLTLDVDSVGAISMRVLASAEVSLWNQRSNAKAEAYTSGSLH 793
>AF024503-16|AAG24086.2| 287|Caenorhabditis elegans Serpentine
receptor, class x protein23 protein.
Length = 287
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 350 FYGLIINIFIMYRARTIEVYLGDIGIYFSNYRL 448
F G+I+N+F++ AR + G GI N+ +
Sbjct: 16 FGGIILNLFVLAAARNMSSMNGSFGIITKNHAI 48
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 485 KHPIVGLMGTQKINKKYFLGSHWWGDHSSY 574
K+PI G + N+ +GS +W DH+++
Sbjct: 199 KNPINGTISEYHANQPTTIGSTYWDDHNTH 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,347
Number of Sequences: 27780
Number of extensions: 356500
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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