Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2329
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   2.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.2  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.3  

>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 386 VFTVQRPPRP*MRNALLLHGRNRQGYGNYPCGLTRRPTTSKPSWKLPTHLNRYRIQLTF- 562
           + ++    RP +RN     G +R G   YP  L+  P + K +    T+  R     +F 
Sbjct: 443 LLSIMESIRPHIRNIDPFGGLSRLGREEYPRRLSNPPPSQKTNQDAWTNRKRPGYSSSFD 502

Query: 563 GTKQLSLSGAND*DSHS 613
           G+ Q + + +N+  +H+
Sbjct: 503 GSSQSTFNPSNNDGAHN 519


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 67   ERVGKLIKLDEFTRTKRSSELKSVSDEFAYDV 162
            +R+G  I L+E   +    +L+  SD+F Y V
Sbjct: 1960 DRIGVCIALEELINSATPEQLEIYSDDFVYAV 1991


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 135 RFQFRRPFGPGEFIQLNQLTNALQVNFFSERKRLE*F 25
           RFQ  +P+GP +    N+       N FSE   LE F
Sbjct: 191 RFQSEQPYGPKDIYCWNRFLITELDNHFSEAHILEKF 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,338
Number of Sequences: 5004
Number of extensions: 42559
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)