Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2329
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 29 3.9
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 29 3.9
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 29 3.9
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 29 3.9
Z81036-1|CAB02742.1| 473|Caenorhabditis elegans Hypothetical pr... 27 8.9
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 VNLERV-GKLIKLDEFTRTKRSSELKSVSDEFAYD 159
+N ERV KL K+D+F + S ELK+V DE D
Sbjct: 2591 LNAERVQSKLNKIDDFW-SSNSRELKNVGDEIKID 2624
>Z81036-1|CAB02742.1| 473|Caenorhabditis elegans Hypothetical
protein C16C2.2a protein.
Length = 473
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 440 HGRNRQGYGNYP--CGLTRRPTTSKPS 514
HG R G+ N+ G T++P TSKP+
Sbjct: 413 HGTKRLGWRNFVFNMGTTKKPATSKPA 439
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 189 NHSRYCFQIYIVREFITDRFQFRRPFGPGEFIQLNQLT 76
NH R+ +I+ + + D+ QF+ P P F +L LT
Sbjct: 383 NHDRHMLKIHPIEQDSRDQCQFQCPDCPTVFKKLGSLT 420
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,324,264
Number of Sequences: 27780
Number of extensions: 244462
Number of successful extensions: 548
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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