Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2329
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +3

Query: 375 LRSQFLQYNGRPALK--CETHYCFTAEIGRVMVTTRADSQDVLQPVSLVGNCQPI*IDTA 548
           +R +FL +N  P        H+      G+      A    +L  +SLVGNC  I I + 
Sbjct: 25  MREKFLGWNVPPEYSDLVRPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFST 84

Query: 549 SNLLLAQSN 575
           S  L   SN
Sbjct: 85  SKSLRTPSN 93


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 375 LRSQFLQYNGRPALKCETHYCFTA--EIGRVMVTTRADSQDVLQPVSLVGNCQPI*IDTA 548
           +R +FL +N  P      H  + A    G+      A    +L  +SLVGNC  I I + 
Sbjct: 25  MREKFLGWNVPPEYSDLVHPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFST 84

Query: 549 SNLLLAQSN 575
           S  L   SN
Sbjct: 85  SKSLRTPSN 93


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 541 IPHPTYFWHKATVPFRGE 594
           +P PT  W KAT    GE
Sbjct: 736 VPTPTIVWKKATGSKSGE 753


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 541 IPHPTYFWHKATVPFRGE 594
           +P PT  W KAT    GE
Sbjct: 732 VPTPTIVWKKATGSKSGE 749


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 283 DELTVYLMLSSYRGLYTSTT*IPPPTLRY 369
           + +  YL+ ++Y G Y +   +P   L Y
Sbjct: 193 NNIDYYLLAANYTGWYLTKHNVPEQRLNY 221


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 283 DELTVYLMLSSYRGLYTSTT*IPPPTLRY 369
           + +  YL+ ++Y G Y +   +P   L Y
Sbjct: 193 NNIDYYLLAANYTGWYLTKHNVPEQRLNY 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,707
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)