Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2327
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.10 
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.55 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   9.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.0  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 214 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 384
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 391 EVNVKQEELASFISTAEQLQVKGLTGNQNEESSTPSKPKPDFEA 522
           ++ + +++L +      Q  V+GL  N N  S+ P+  KP F+A
Sbjct: 104 QLKINEQDLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKA 147


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 506 SPTSRPGPRSSQQRQSVMTKLETDLDSKPSSTSVAVKRP 622
           +PT RP    + +R SV     + +   P+ TS+   RP
Sbjct: 61  TPTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRP 99


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 286  FQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 450
            + E +    T    +F +D S     DL       ++NV+ + L+SF+ ++E L+
Sbjct: 1703 YNEFYSQLDTSTSDIF-QDTSVDGFPDL---QVSSDINVRNDRLSSFVMSSEDLR 1753


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 512 TSRPGPRSSQQRQSVMTKLE-TDLDSKPSSTSVAVKRP 622
           TS P    + Q+QS +TK    D + +PS    + KRP
Sbjct: 705 TSSPKSSENSQKQSEITKKRGRDEEDEPSDLHSSPKRP 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,257
Number of Sequences: 5004
Number of extensions: 49479
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)