Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2325
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1055 + 23986258-23986459,23986734-23986825,23987389-239874...    29   4.5  
05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019...    29   4.5  

>08_02_1055 +
           23986258-23986459,23986734-23986825,23987389-23987412,
           23987932-23988068,23988533-23988692,23988997-23989006,
           23989449-23989726,23990059-23990136
          Length = 326

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 362 ILGPWLAGRWLLYIRTKTSYPLYTMTSRQQLSTDPIYYNLSPICI 496
           + GP      LL++  + S P  T+ SR  ++ DP Y + +PIC+
Sbjct: 210 VTGPQDDSMLLLHLERRCS-PAATIFSRYGVARDPEYTSSAPICL 253


>05_07_0288 +
           29001228-29001399,29001493-29001723,29001817-29001914,
           29002687-29002873,29003068-29003198,29003282-29003908
          Length = 481

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +1

Query: 232 FYVYKL-PRERNHLNPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRSMVGRTLAPLYQD 408
           FY Y L  R  +H     RR + +  L    L  GW+   +         G T+  +   
Sbjct: 103 FYAYYLMSRVLDHCEAHGRRHIRFRELAADVLGSGWVFYLVVTVQTAINAGITIGSILLA 162

Query: 409 KNIISLVYNDQPP 447
            + + ++Y+D  P
Sbjct: 163 ADCLQIMYSDLAP 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,179,441
Number of Sequences: 37544
Number of extensions: 356407
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)