Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2325
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.2  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 158 NKNNFKRDMTSVFESNRSSNKTPNKSRLFVYYDMLHI 48
           N NN+K +  +   +N + N   N +   +YY++++I
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINI 361


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 452 LSTDPIYYNLSPICIQKAKE 511
           + T+PIYYNL+ + +   K+
Sbjct: 206 VETEPIYYNLTMVKLNWPKK 225


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 401 YKGASVLPTMDLGSLIARSDIIQPP 327
           YK A V P     SLI R  II+ P
Sbjct: 498 YKNADVRPPFTYASLI-RQSIIESP 521


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 216 PFLISALRGETQGIIYKKCKQKQ 148
           PFL   + G+ + ++Y   K+K+
Sbjct: 23  PFLKRLITGDEKWVVYNNIKRKR 45


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 216 PFLISALRGETQGIIYKKCKQKQ 148
           PFL   + G+ + ++Y   K+K+
Sbjct: 144 PFLKRLITGDEKWVVYNNIKRKR 166


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/38 (23%), Positives = 14/38 (36%)
 Frame = -1

Query: 200 HCGVRHRESFIKNANKNNFKRDMTSVFESNRSSNKTPN 87
           HC   ++   I+N N  N      +   +N   N   N
Sbjct: 413 HCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQN 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,342
Number of Sequences: 438
Number of extensions: 4086
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)