Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2323
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   2.2  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    27   2.2  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   3.9  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   9.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   9.0  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 335 LIREIPVQVNIVCISATLQTIEITRSGGLVAVRVHARQQVDPRVVQHVL 189
           LI   P ++ +  ++AT +T+E+ R+  +    +     + PR+V  VL
Sbjct: 431 LIHNDPKEIYLQYLAATYETLEVPRAKSVTLWLISEHILIIPRLVPDVL 479


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 323 IPVQVNIVCISATLQTIEITRSGGLVAVRVHAR 225
           +PV+V+  C S T++ +   R  GLVA  V  R
Sbjct: 153 VPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKR 185


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 11  ARKRVIRTGGYQRSRRPHSRETGIQVRSQ 97
           +R R  + G + RS RP SRE G + R +
Sbjct: 33  SRHRESKHGRHDRSERPSSREAGDRSRHE 61


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 401 LRPLHHRESLGLLDFIFLGTSKLIREI 321
           LRPL H+ SLG+ D +     K+I  +
Sbjct: 802 LRPLLHKTSLGVGDILLEVNGKMITRL 828


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 177 DNRIQNMLNNTRIHLLPSMNPDGYETARPGDFDGLKGRTNAHDVDLNRNFP 329
           D++ Q   NN  ++     N + Y+T +    DG+   T    V+L+ N P
Sbjct: 73  DDKDQLTENNDNLYNDKKSNGNFYDTNKTDSVDGMVYTTIVDSVELDPNDP 123


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 303 DVDLNRNFPDQFGST*ENEVQEPETFA 383
           DVD++++ P+ F  T EN+   P   A
Sbjct: 373 DVDIDQSLPNSFDFTLENDQVPPRLIA 399


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 204 NTRIHLLPSMNPDGYETARPGDFDGLKGRTNAHDVDLN 317
           N  ++L+    P GY T  P D    + +TNA +V LN
Sbjct: 213 NHDVNLMQGSAP-GYSTVEPEDNFASEIQTNAPEVHLN 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,186
Number of Sequences: 5004
Number of extensions: 42950
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)