Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2323
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 113 1e-25
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101... 36 0.015
08_02_0742 - 20630313-20630798 32 0.32
12_02_1081 + 25914180-25914371,25918121-25919104 31 0.74
11_06_0040 + 19532262-19532910,19533509-19533540 29 2.3
11_06_0206 + 21201030-21201422 28 4.0
04_03_0609 + 17957124-17957465 27 6.9
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 27 9.1
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 27 9.1
05_03_0013 + 7362056-7362471,7363235-7364081,7364272-7364758,736... 27 9.1
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 113 bits (271), Expect = 1e-25
Identities = 59/128 (46%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Frame = +3
Query: 87 YVANMHGNEAVGREXXXXXAKYLCQQYVAGDNRIQNMLNNTRIHLLPSMNPDGYETARPG 266
YV N+HG+E VGRE A +LC Y+ D ++ N +H+LP+MNPDG+
Sbjct: 179 YVGNVHGDEPVGREVLIKLANWLCDNYLK-DPLATLIVKNMHLHILPTMNPDGF------ 231
Query: 267 DFDGLKGRTNAHDVDLNRNFPDQF-GST*ENEVQEPETFAVMKWSQSIPFVLSANLHSGA 443
L+ R NA++VDLNR+FPDQF + E ++PET A+M W + F SA+LH GA
Sbjct: 232 ---ALRRRGNANNVDLNRDFPDQFFTNNDEINYRQPETRAIMNWVKQEHFTASASLHGGA 288
Query: 444 LVANYPYD 467
LVANYP+D
Sbjct: 289 LVANYPWD 296
>02_01_0141 +
1017654-1017745,1018332-1018389,1018485-1018595,
1018853-1018990,1019559-1019628,1019711-1019766,
1020203-1020328,1020648-1020787,1020932-1021004,
1021095-1021169,1021277-1021591
Length = 417
Score = 36.3 bits (80), Expect = 0.015
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Frame = +3
Query: 102 HGNEAVGREXXXXXAKYLCQQY-VAGDN--RIQNMLNNTRIHLLPSMNPDGYETARPGDF 272
HG E + E L ++ +AG + + +L N I ++P N +G + G+
Sbjct: 92 HGRELITSEVALNLLYILTEKRKIAGVDLSSFEKILENLVIKVVPMENLNGRKRVEEGE- 150
Query: 273 DGLKGRTNAHDVDLNRNFPDQFGST*EN-----------EVQEPETFAVMKWSQSIPFVL 419
L R N VDLNRN+ +G ++ EPE + + S+S +
Sbjct: 151 --LCDRRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTAPFSEPEAQIMRELSKSFKPHM 208
Query: 420 SANLHSGALVANYPYDDNPSMRSG 491
N+HSG PYD + +G
Sbjct: 209 WVNVHSGMEALFMPYDHKNTTPNG 232
>08_02_0742 - 20630313-20630798
Length = 161
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 365 RARDFRGDEVVAVNPVRAVCQPAQWRAGRQL-PLRRQP*HAQREGVLSSDN 514
R R RG+E V+PVRAV Q R GR+ P R QR G S++
Sbjct: 74 RRRRGRGEEADGVDPVRAVTTKRQRRGGRRCRPKRAATMKRQRRGGARSNS 124
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 354 NEVQEPETFAVMKWSQSIPFVLSANLHSGALVANYPYDDN 473
+E+ PET ++KW IP V+ L + +P D N
Sbjct: 224 DEIPSPETVQLLKWCDGIPQVMHLELKNYMYSFEFPIDYN 263
>11_06_0040 + 19532262-19532910,19533509-19533540
Length = 226
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 97 ICMGTKPSDANFCCCWRSTCVSS---TSPAITAY 189
+ + + S NF C W +TC S+ T PA T Y
Sbjct: 17 LILASSASATNFTCTWPTTCQSAIVYTPPAATTY 50
>11_06_0206 + 21201030-21201422
Length = 130
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 GARKRVIRTG-GYQRSRRPHSRETGIQVRSQYAWERSRR 121
G R+R++R +RSRR + ETG Q R WE RR
Sbjct: 53 GGRRRLLRRNIERRRSRRAMNLETGAQ-RRDLRWELRRR 90
>04_03_0609 + 17957124-17957465
Length = 113
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 26 IRTGGYQRSRRPHSRETGIQVRSQYAWERSRRTRTSAVVG 145
++ GG + R+ R +R AW R ++ R+SAVVG
Sbjct: 16 LQAGGAEAQRQRAHRRIQPPLRVPRAWFRLQQCRSSAVVG 55
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 222 LPSMNPDGYETARPG----DFDGLKGRTNAHDVDLNRNFPDQFGST 347
LPS + A P D D RT + V N NF D FGST
Sbjct: 428 LPSYQEHHFAKAMPSEDNFDDDFSTRRTESKSVPSNDNFNDDFGST 473
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 151 YFANNSRSSRPTASFPCILATYLNSGFPGMWT-PGSLVTSSTYNSLPCTDL 2
Y+ N S SSR + C L + SGF + T P + YN + CT +
Sbjct: 193 YYHNASLSSRYNVNSYCDLLISIFSGFANVSTLPPPSSSQLLYNCMRCTGI 243
>05_03_0013 +
7362056-7362471,7363235-7364081,7364272-7364758,
7365062-7365126,7365275-7365643
Length = 727
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 162 QYVAGDNRIQNMLNNTRIHLLPSMNPDGYETARPGDF--DGLKGRTNAH 302
+YV G + NNT + LP + DG ++R F D LK R++ H
Sbjct: 335 KYVLGGFSERCSKNNTWLMGLPDFDADGKSSSRGSKFCLDDLKYRSSLH 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,958,451
Number of Sequences: 37544
Number of extensions: 310748
Number of successful extensions: 907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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