Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2323
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.62 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.62 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 136 CCWRSTCVSSTSPAI 180
           CCW   C + T+PAI
Sbjct: 488 CCWWKICWTITTPAI 502


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 136 CCWRSTCVSSTSPAI 180
           CCW   C + T+PAI
Sbjct: 541 CCWWKICWTITTPAI 555


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 68  GNVDAWISGNLQYV 27
           GNV A+I GN+ +V
Sbjct: 794 GNVQAYIDGNVVFV 807


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 99  MHGNEAVGREXXXXXAKYLCQQYVAGDNRIQNMLNNTR 212
           +HG E   +E     AK   +QY +   R+ +  +  R
Sbjct: 54  IHGTEPRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIR 91


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 94  PICMGTKPSDANFCCCWRSTCVSSTS 171
           P+C       AN C   R+ C S +S
Sbjct: 116 PVCASNGKIYANHCELHRAACHSGSS 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,922
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)