Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2321
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    29   0.61 
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   4.3  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.6  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   7.5  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 343 YAVVTLFVNNNVFYKVVLSTLFYSIINSFRRARDVNNILSN--FFTPWVTLLE 191
           Y+ +  FV   VF  ++L +LFY++ N         ++LSN   FT   T+ E
Sbjct: 429 YSYIATFVFTYVFQALMLGSLFYNLRNESSELYSRGSVLSNAIVFTAIQTMSE 481


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
 Frame = -1

Query: 203 YIIGVLVGIPNFILFLNIACVT---------RE*CSFQTVRRILQIGPVVS-EPIQNKQT 54
           Y+IG ++G+P  I F+ I  +          R  C+F+ ++  +Q+  V+S E IQ +++
Sbjct: 121 YLIGNIIGLPLTIPFILIPLIPNIPGFYLCYRAYCNFRAIQGSIQLARVMSIENIQMQES 180

Query: 53  NK 48
            K
Sbjct: 181 EK 182


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 381 FIYKNKTSNIVDIFVKDPNGAGAGRLFYTKGNVEKIAPPTA*C*--GSLQITEERHVIPH 554
           ++Y ++  +I+ + +   +    G     +  V+K+ P T      GS+QI   R V+P 
Sbjct: 7   YVYPHRERDILCVKIWTIHLGSWGNPMPNRACVQKVLPVTKQISSDGSVQIDTVRAVLPE 66

Query: 555 FQF 563
           FQF
Sbjct: 67  FQF 69


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 234 IF*VIFLHLGLHYWSFSGD 178
           IF  IFL LGL  W FS +
Sbjct: 484 IFQTIFLRLGLGVWPFSSE 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,862
Number of Sequences: 5004
Number of extensions: 54235
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)