Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2321
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0110 - 865605-866004,866094-866712,867659-867863                 32   0.48 
02_04_0329 + 22081052-22082434                                         29   2.5  
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193...    29   4.4  
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106...    28   7.7  

>03_01_0110 - 865605-866004,866094-866712,867659-867863
          Length = 407

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = -2

Query: 301 KVVLSTLFYSIINSFRRARDVNNILSNFFTPWVTLLEF*WGSLILFY 161
           K    T+F+S+I S+R AR + + LS    P   LLE   GS +LF+
Sbjct: 4   KRTTKTVFFSLIESYRSARHLPSKLSQTIEPQCLLLEA-CGSPLLFH 49


>02_04_0329 + 22081052-22082434
          Length = 460

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 295 RLCRIHYYLQKVSRQHMSNYYSYAAISVLLFIKIKRQISLT---FLLKTRTEPEQAACFI 465
           RL R++Y   K+  Q        AAI+     +++R++ LT     + T+ EP +  C+ 
Sbjct: 57  RLPRLYYLKLKLVSQAWK-----AAITSSELSQLRRELGLTEEWLYVLTKLEPNKLDCYA 111

Query: 466 LKAMLKR*RHLPP 504
           L  + ++ + LPP
Sbjct: 112 LDPLFRKWQRLPP 124


>01_06_0873 +
           32617428-32617532,32618166-32618234,32619195-32619380,
           32619687-32619776,32620389-32620462,32621149-32621260,
           32621413-32621468,32621826-32621880,32621965-32622021,
           32622696-32622797,32623467-32623547,32623756-32623808,
           32625245-32625314,32626540-32626603,32627339-32627487,
           32627564-32627719,32628011-32628108,32628763-32628847,
           32628932-32628997,32629066-32629125,32629408-32629494,
           32630307-32630360,32630538-32630576,32630651-32630779,
           32630859-32630911,32630984-32631032,32632240-32632298,
           32633111-32633259,32633338-32633492,32633719-32633847,
           32633932-32634017,32634220-32634335,32634429-32634541,
           32635335-32635458,32635540-32635658,32636289-32636490,
           32636586-32636757,32637852-32638176,32638442-32638529,
           32638970-32639059,32639169-32639370,32639681-32639705
          Length = 1450

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 636 KIKMEAFGCFCEGPAINELSSHLVRIENE-VLRAFL 532
           +++     CFC+ P +  LSS +   +NE +LR FL
Sbjct: 44  QVQCTCLECFCKKPKLRSLSSPMEIAQNEDILRMFL 79


>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
            29411035-29411045,29411420-29415325,29415437-29415920
          Length = 1574

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 630  KMEAFGCFCEGPAINELSSHLVRIENEVLR 541
            K+  F C C G  +  LSSH  ++   V+R
Sbjct: 1126 KLRIFNCSCSGKELTLLSSHFPKLSMFVIR 1155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,627,094
Number of Sequences: 37544
Number of extensions: 311327
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)