Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2321
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical p...    29   3.0  
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF039713-1|AAB96725.1|  268|Caenorhabditis elegans Hypothetical ...    28   6.9  

>L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical
           protein F10E9.10 protein.
          Length = 203

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 221 FFYTLGYIIGVLVGIPNFILFLNIACVTRE*CSFQTVRRILQIGPVVSEPI 69
           + YT+  II   +   N +   N  CV  +   + + R +LQ  PV++ PI
Sbjct: 21  YLYTVSIIISCSLLYWNLLYCKNYDCVVEKEFRWGSTRHLLQYFPVIAAPI 71


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 66  LNRLRNYWTDLKNSSYCLETTLFPSDTGYI*K*NKIRD 179
           +N+ +N  T L +SS  +  T  PSD+G I   N IRD
Sbjct: 397 INQQKNVLTTLSSSSSGIHVTPSPSDSGIIDYENLIRD 434


>AF039713-1|AAB96725.1|  268|Caenorhabditis elegans Hypothetical
           protein F57B10.8 protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 575 DESSFIAGPSQKHPKASILIFNTHPPK 655
           DE      P QK  K  ++ F+T PPK
Sbjct: 66  DEMETFEDPEQKQKKTGVVFFSTIPPK 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,390
Number of Sequences: 27780
Number of extensions: 301754
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)